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Add timestamp to rpointers #1056

Add timestamp to rpointers

Add timestamp to rpointers #1056

Workflow file for this run

name: cime testing
on:
push:
branches:
- master
paths:
- 'CIME/**'
- 'scripts/**'
- 'tools/**'
- 'utils/**'
- 'docker/**'
pull_request:
branches:
- master
paths:
- 'CIME/**'
- 'scripts/**'
- 'tools/**'
- 'utils/**'
- 'docker/**'
workflow_dispatch:
concurrency:
group: ${{ github.ref }}
cancel-in-progress: true
permissions:
contents: read # to fetch code (actions/checkout)
packages: read
jobs:
build-containers:
runs-on: ubuntu-latest
if: ${{ github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository }}
permissions:
packages: write
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Docker meta
id: meta
uses: docker/metadata-action@v5
with:
images: ghcr.io/ESMCI/cime
tags: |
type=raw,value=latest,enable=${{ github.event_name == 'push' }}
type=ref,event=pr,enable=${{ github.event_name == 'pull_request' }}
type=sha,format=long
- name: Build and push
uses: docker/build-push-action@v6
with:
target: base
context: docker/
push: true
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
cache-from: type=gha
cache-to: type=gha,mode=max
pre-commit:
runs-on: ubuntu-latest
if: ${{ github.event_name == 'pull_request' && ! cancelled() }}
timeout-minutes: 2
steps:
- name: Checkout code
uses: actions/checkout@v3
- name: Set up python
uses: actions/setup-python@v2
with:
python-version: 3.9
- name: Runs pre-commit
run: |
pip install pre-commit
pre-commit run -a
# Runs unit testing under different python versions.
unit-testing:
runs-on: ubuntu-latest
if: ${{ github.event_name == 'pull_request' && always() && ! cancelled() }}
needs: build-containers
container:
image: ghcr.io/esmci/cime:${{ github.event.pull_request.head.repo.full_name == github.repository && format('sha-{0}', github.sha) || 'latest' }}
credentials:
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
strategy:
matrix:
python-version: ['3.8', '3.9', '3.10']
steps:
- name: Checkout code
uses: actions/checkout@v3
- name: Run tests
shell: bash
env:
CIME_MODEL: "cesm"
CIME_DRIVER: "nuopc"
CIME_TEST_PLATFORM: ubuntu-latest
run: |
export CIME_REMOTE=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }}
export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}}
source /entrypoint.sh
# from 'entrypoint.sh', create and activate new environment
create_environment ${{ matrix.python-version }}
pip install -r test-requirements.txt
# GitHub runner home is different than container
cp -rf /root/.cime /github/home/
pytest -vvv --cov=CIME --machine docker --no-fortran-run CIME/tests/test_unit*
# Run system tests
system-testing:
runs-on: ubuntu-latest
if: ${{ github.event_name == 'pull_request' && always() && ! cancelled() }}
needs: build-containers
container:
image: ghcr.io/esmci/cime:${{ github.event.pull_request.head.repo.full_name == github.repository && format('sha-{0}', github.sha) || 'latest' }}
credentials:
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
options: --hostname docker
strategy:
# allow all jobs to finish
fail-fast: false
matrix:
model: ["e3sm", "cesm"]
driver: ["mct", "nuopc"]
exclude:
# exclude nuopc driver when running e3sm tests
- model: "e3sm"
driver: "nuopc"
# exclude mct driver when running cesm tests
- model: "cesm"
driver: "mct"
steps:
- name: Checkout code
uses: actions/checkout@v3
- name: Cache inputdata
uses: actions/cache@v2
with:
path: /storage/inputdata
key: inputdata-2
- name: Run tests
shell: bash
env:
CIME_MODEL: ${{ matrix.model }}
CIME_DRIVER: ${{ matrix.driver }}
CIME_TEST_PLATFORM: ubuntu-latest
run: |
pip install -r test-requirements.txt
export CIME_REMOTE=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }}
export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}}
source /entrypoint.sh
# GitHub runner home is different than container
cp -rf /root/.cime /github/home/
source /opt/conda/etc/profile.d/conda.sh
conda activate base
# container libnetcdf is 4.9.2 as cesm requires esmf >8.6.1
# e3sm scorpio incompatible with 4.9.2, downgrade to 4.9.1
# only reference found about scorpio incompatibility with 4.9.2 (https://github.com/E3SM-Project/scorpio/issues/554#issuecomment-1877361470)
# TODO open scorpio issue, possible solutions; 1. support two conda environments in container 2. maybe move from conda to spack? build all libraries in image
if [[ "${CIME_MODEL}" == "e3sm" ]]; then
mamba install -y 'libnetcdf=4.9.1'
fi
pytest -vvv --cov=CIME --machine docker --no-fortran-run --no-teardown CIME/tests/test_sys*
- uses: mxschmitt/action-tmate@v3
if: ${{ !always() }}
with:
limit-access-to-actor: true
- name: Create testing log archive
if: ${{ failure() }}
shell: bash
run: tar -czvf /testing-logs-${GITHUB_RUN_NUMBER}-${{ matrix.model }}-${{ matrix.driver }}.tar.gz /storage/cases/
# How to download artifacts:
# https://docs.github.com/en/actions/managing-workflow-runs/downloading-workflow-artifacts
- name: Upload testing logs
if: ${{ failure() }}
uses: actions/upload-artifact@v3
with:
name: testing-logs-${{ github.run_number }}-${{ matrix.model }}-${{ matrix.driver }}
path: /testing-logs-${{ github.run_number}}-${{ matrix.model }}-${{ matrix.driver }}.tar.gz
retention-days: 4