Fixes compare_xml method for env_batch #1059
Workflow file for this run
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| name: cime testing | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths: | |
| - 'CIME/**' | |
| - 'scripts/**' | |
| - 'tools/**' | |
| - 'utils/**' | |
| - 'docker/**' | |
| pull_request: | |
| branches: | |
| - master | |
| paths: | |
| - 'CIME/**' | |
| - 'scripts/**' | |
| - 'tools/**' | |
| - 'utils/**' | |
| - 'docker/**' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| packages: read | |
| jobs: | |
| build-containers: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'push' || github.event.pull_request.head.repo.full_name == github.repository }} | |
| permissions: | |
| packages: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/ESMCI/cime | |
| tags: | | |
| type=raw,value=latest,enable=${{ github.event_name == 'push' }} | |
| type=ref,event=pr,enable=${{ github.event_name == 'pull_request' }} | |
| type=sha,format=long | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| target: base | |
| context: docker/ | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'pull_request' && ! cancelled() }} | |
| timeout-minutes: 2 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Runs pre-commit | |
| run: | | |
| pip install pre-commit | |
| pre-commit run -a | |
| # Runs unit testing under different python versions. | |
| unit-testing: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'pull_request' && always() && ! cancelled() }} | |
| needs: build-containers | |
| container: | |
| image: ghcr.io/esmci/cime:${{ github.event.pull_request.head.repo.full_name == github.repository && format('sha-{0}', github.sha) || 'latest' }} | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Run tests | |
| shell: bash | |
| env: | |
| CIME_MODEL: "cesm" | |
| CIME_DRIVER: "nuopc" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| run: | | |
| export CIME_REMOTE=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }} | |
| export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}} | |
| source /entrypoint.sh | |
| # from 'entrypoint.sh', create and activate new environment | |
| create_environment ${{ matrix.python-version }} | |
| pip install -r test-requirements.txt | |
| # GitHub runner home is different than container | |
| cp -rf /root/.cime /github/home/ | |
| pytest -vvv --cov=CIME --machine docker --no-fortran-run CIME/tests/test_unit* | |
| # Run system tests | |
| system-testing: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'pull_request' && always() && ! cancelled() }} | |
| needs: build-containers | |
| container: | |
| image: ghcr.io/esmci/cime:${{ github.event.pull_request.head.repo.full_name == github.repository && format('sha-{0}', github.sha) || 'latest' }} | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| options: --hostname docker | |
| strategy: | |
| # allow all jobs to finish | |
| fail-fast: false | |
| matrix: | |
| model: ["e3sm", "cesm"] | |
| driver: ["mct", "nuopc"] | |
| exclude: | |
| # exclude nuopc driver when running e3sm tests | |
| - model: "e3sm" | |
| driver: "nuopc" | |
| # exclude mct driver when running cesm tests | |
| - model: "cesm" | |
| driver: "mct" | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Cache inputdata | |
| uses: actions/cache@v2 | |
| with: | |
| path: /storage/inputdata | |
| key: inputdata-2 | |
| - name: Run tests | |
| shell: bash | |
| env: | |
| CIME_MODEL: ${{ matrix.model }} | |
| CIME_DRIVER: ${{ matrix.driver }} | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| run: | | |
| pip install -r test-requirements.txt | |
| export CIME_REMOTE=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }} | |
| export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}} | |
| source /entrypoint.sh | |
| # GitHub runner home is different than container | |
| cp -rf /root/.cime /github/home/ | |
| source /opt/conda/etc/profile.d/conda.sh | |
| conda activate base | |
| # container libnetcdf is 4.9.2 as cesm requires esmf >8.6.1 | |
| # e3sm scorpio incompatible with 4.9.2, downgrade to 4.9.1 | |
| # only reference found about scorpio incompatibility with 4.9.2 (https://github.com/E3SM-Project/scorpio/issues/554#issuecomment-1877361470) | |
| # TODO open scorpio issue, possible solutions; 1. support two conda environments in container 2. maybe move from conda to spack? build all libraries in image | |
| if [[ "${CIME_MODEL}" == "e3sm" ]]; then | |
| mamba install -y 'libnetcdf=4.9.1' | |
| fi | |
| pytest -vvv --cov=CIME --machine docker --no-fortran-run --no-teardown CIME/tests/test_sys* | |
| - uses: mxschmitt/action-tmate@v3 | |
| if: ${{ !always() }} | |
| with: | |
| limit-access-to-actor: true | |
| - name: Create testing log archive | |
| if: ${{ failure() }} | |
| shell: bash | |
| run: tar -czvf /testing-logs-${GITHUB_RUN_NUMBER}-${{ matrix.model }}-${{ matrix.driver }}.tar.gz /storage/cases/ | |
| # How to download artifacts: | |
| # https://docs.github.com/en/actions/managing-workflow-runs/downloading-workflow-artifacts | |
| - name: Upload testing logs | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: testing-logs-${{ github.run_number }}-${{ matrix.model }}-${{ matrix.driver }} | |
| path: /testing-logs-${{ github.run_number}}-${{ matrix.model }}-${{ matrix.driver }}.tar.gz | |
| retention-days: 4 |