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@EichlerLab

Eichler Lab

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  1. pav pav Public

    Phased assembly variant caller

    Python 109 8

  2. smrtsv2 smrtsv2 Public

    Structural variant caller

    Python 54 6

  3. svpop svpop Public

    Variant annotation and merging pipeline

    Python 31 6

  4. pacbio_variant_caller pacbio_variant_caller Public archive

    SMRT-SV: Structural variant and indel caller for PacBio reads

    Python 28 15

  5. vcf-flow vcf-flow Public

    Forked from huddlej/tab-to-vcf

    Convert tab-delimited file into a VCF

    Python 8 2

  6. chm1_scripts chm1_scripts Public

    Python 8 5

Repositories

Showing 10 of 80 repositories
  • docker_hub Public

    Repository for Testing Automatic Builds with Docker Hub

    EichlerLab/docker_hub’s past year of commit activity
    Python 1 1 0 0 Updated Mar 1, 2025
  • assembly_qc Public Forked from youngjun0827/assembly_qc

    assembly QC pipeline starts with foreign contamination screening

    EichlerLab/assembly_qc’s past year of commit activity
    Python 0 1 0 0 Updated Feb 28, 2025
  • reads_processing Public

    Support for quality trimming and downsampling from the longest reads for reads used in assembly construction.

    EichlerLab/reads_processing’s past year of commit activity
    Python 0 0 0 0 Updated Feb 28, 2025
  • snakemake_pipelines Public

    General Snakemake pipelines.

    EichlerLab/snakemake_pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Feb 28, 2025
  • assembly_eval Public
    EichlerLab/assembly_eval’s past year of commit activity
    Python 0 1 0 0 Updated Feb 26, 2025
  • compteam_tools Public

    A collection of custom scripts for everyday long read analysis

    EichlerLab/compteam_tools’s past year of commit activity
    Python 0 1 0 0 Updated Feb 14, 2025
  • CDR-Finder Public

    Workflow to identify the centromere dip regions (CDR) from methyl BAMs

    EichlerLab/CDR-Finder’s past year of commit activity
    Python 6 1 0 0 Updated Feb 13, 2025
  • audano_curve Public
    EichlerLab/audano_curve’s past year of commit activity
    Python 0 0 0 0 Updated Feb 10, 2025
  • align_all Public

    A general read-alignment pipeline for PacBioHiFi, ONT, and Illumina data.

    EichlerLab/align_all’s past year of commit activity
    Python 0 0 0 0 Updated Jan 30, 2025
  • AoU_WDL Public

    Repository for storing WDL workflows for execution in the AoU Researcher Workbench

    EichlerLab/AoU_WDL’s past year of commit activity
    WDL 0 1 0 0 Updated Jan 22, 2025
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