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edits to declaration and doc string
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ens-LCampbell committed Apr 10, 2024
1 parent dce58eb commit 8f8b8f2
Showing 1 changed file with 3 additions and 4 deletions.
7 changes: 3 additions & 4 deletions src/python/ensembl/io/genomio/assembly/status.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@
from pathlib import Path
import re
import sys
from typing import Dict, Tuple, Union
from typing import Dict, Tuple, Union, List

from spython.main import Client
from sqlalchemy.engine import URL
Expand Down Expand Up @@ -174,7 +174,7 @@ def resolve_query_type(
return query_accessions, query_type


def fetch_accessions_from_cores(database_names: list, connection_url: URL) -> Dict:
def fetch_accessions_from_cores(database_names: List, connection_url: URL) -> Dict:
"""Obtain the associated INSDC accession [meta.assembly.accession] given a set of core(s) names
and a MYSQL server host.
Expand Down Expand Up @@ -215,8 +215,7 @@ def fetch_accessions_from_cores(database_names: list, connection_url: URL) -> Di
def datasets_asm_reports(
sif_image: str, assembly_accessions: dict, download_directory: PathLike, batch_size: int
) -> Dict:
"""Obtain multiple assembly report JSONs in one or more querys to datasets,
i.e. make individual since accn query to datasets tool.
"""Obtain assembly report(s) JSONs for one or more queries made to datasets CLI.
Args:
sif_image: Instance of Client.loaded singularity image.
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