fix test condition

.github/workflows/R-CMD-check.yaml

@@ -54,11 +54,9 @@ jobs:
              wget https://dalexander.github.io/admixture/binaries/admixture_linux-1.3.0.tar.gz
              tar -xvzf admixture_linux-1.3.0.tar.gz
              cd ..
-             echo "$PATH"
-             echo "$HOME"
-             mkdir -p /home/runner/.local/bin
-             cp "$PWD/admixture/dist/admixture_linux-1.3.0/admixture" "/usr/local/bin/admixture"
-             # echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH"
+             #mkdir -p /home/runner/.local/bin
+             #cp "$PWD/admixture/dist/admixture_linux-1.3.0/admixture" "/usr/local/bin/admixture"
+             echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH"
 
       - name: Test ADMIXTURE for linux
         if: matrix.config.os == 'ubuntu-latest'

_pkgdown.yml

@@ -94,7 +94,7 @@ reference:
         - autoplot.gt_dapc
         - autoplot.gt_cluster_pca
   - title: "K-clustering and ADMXITURE"
-    desc: "Functions for creating, tidying, and visualising `q_matrix` objects."
+    desc: "Functions for creating, tidying, and visualising `gt_admix` and `q_matrix` objects."
     contents:
         - gt_admixture
         - autoplot.gt_admix
@@ -107,7 +107,6 @@ reference:
         - tidy.q_matrix
         - augment.q_matrix
         - autoplot.q_matrix
-        - summary.q_matrix_list
         - distruct_colours
         - scale_fill_distruct
         - theme_distruct

tests/testthat/test_gt_admixture.R

@@ -1,5 +1,6 @@
+
 # skip if admixture is not installed
-skip_if((system2("which", args = "admixture", stdout = NULL) != 0)||!requireNamespace("fastmixturer", quietly = TRUE))
+skip_if((system2("which", args = "admixture", stdout = NULL) != 0) && !requireNamespace("fastmixturer", quietly = TRUE))
 # set the input file
 vcf_path <- system.file("/extdata/anolis/punctatus_t70_s10_n46_filtered.recode.vcf.gz",
                         package = "tidypopgen")