fixed unicode decode error

FAIRChemistry · Oct 25, 2024 · 0dd5cbb · 0dd5cbb
1 parent fd170de
commit 0dd5cbb
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Showing 5 changed files with 196 additions and 204 deletions.
diff --git a/chromatopy/readers/agilent_csv.py b/chromatopy/readers/agilent_csv.py
@@ -21,8 +21,6 @@ def read(self) -> list[Measurement]:
         'RESULTS.CSV' files {len(self.file_paths)}.
         """
 
-        print(self.file_paths)
-
         measurements = []
         for path_idx, csv_path in enumerate(self.file_paths):
             peaks = self._read_peaks_from_csv(csv_path)

diff --git a/chromatopy/readers/agilent_rdl.py b/chromatopy/readers/agilent_rdl.py
@@ -74,7 +74,6 @@ def extract_information(lines: list[str]) -> Tuple[list[list[str]], list[str], s
                     sample_name.append(lines[i + 1])
                 else:
                     sample_name.append("")
-                    print("")
 
             if "│Signal:│" in line:
                 signal = line

diff --git a/chromatopy/tools/analyzer.py b/chromatopy/tools/analyzer.py
@@ -509,9 +509,12 @@ def read_agilent(
 
         try:
             txt_path = next(directory.rglob("*.txt"))
-            lines = AgilentRDLReader.read_file(str(txt_path))
-            if lines[0].startswith("┌─────"):
-                rdl_paths = [str(f.absolute()) for f in directory.rglob("*.txt")]
+            try:
+                lines = AgilentRDLReader.read_file(str(txt_path))
+                if lines[0].startswith("┌─────"):
+                    rdl_paths = [str(f.absolute()) for f in directory.rglob("*.txt")]
+            except UnicodeDecodeError:
+                txt_paths = txt_paths
         except StopIteration:
             txt_paths = txt_paths