34 add fixed filter to app (#35)

* using fixed upload name as filters_locked * clean up * add super().normalize at beginning of nrvs normalizer * fix ruff check
FAIRmat-NFDI · Jun 24, 2024 · 4ad0a9f · 4ad0a9f
1 parent e4b11d5
commit 4ad0a9f
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Showing 2 changed files with 34 additions and 35 deletions.
diff --git a/src/nomad_unisyscat/apps/__init__.py b/src/nomad_unisyscat/apps/__init__.py
@@ -39,6 +39,7 @@
         filter_menus=FilterMenus(
             options={
                 'material': FilterMenu(label='Material'),
+                'elements': FilterMenu(label='Elements / Formula', level=1, size='xl'),
                 'eln': FilterMenu(label='Electronic Lab Notebook'),
                 'custom_quantities': FilterMenu(label='User Defined Quantities'),
                 'author': FilterMenu(label='Author / Origin / Dataset'),
@@ -48,6 +49,7 @@
         filters=Filters(
             include=['*#nomad_unisyscat.schema_packages.mypackage.*'],
         ),
+        filters_locked={'upload_name': 'UniSysCat Test Data'},
         dashboard={
             'widgets': [
                 {

diff --git a/src/nomad_unisyscat/schema_packages/mypackage.py b/src/nomad_unisyscat/schema_packages/mypackage.py
@@ -463,13 +463,12 @@ class NRVSpectroscopy(Measurement, PlotSection, Schema):
     results.section_def = NRVSResult
 
     def normalize(self, archive, logger):
-
+        super().normalize(archive, logger)
         if self.data_file is None:
             return
 
         if (self.data_file is not None) and (
-            os.path.splitext(self.data_file)[-1] != '.dat'
-        ):
+            os.path.splitext(self.data_file)[-1] != '.dat'):
             raise ValueError('Unsupported file format. Only .dat file')
 
         if self.data_file.endswith('.dat'):
@@ -486,40 +485,38 @@ def normalize(self, archive, logger):
             results.append(result)
             self.results = results
 
-        if self.data_file.endswith('_NRVS_exp.dat'):
-            file_name = str(self.data_file)
-            sample_name = file_name.split('_NRVS')
-            if self.samples is None or self.samples == []:
-                sample = CompositeSystemReference()
-                sample.name = sample_name[0]
-                sample.lab_id = sample_name[0]
-                from nomad.datamodel.context import ClientContext
-                if isinstance(archive.m_context, ClientContext):
-                    pass
-                else:
-                    sample.normalize(archive, logger)
-                samples = []
-                samples.append(sample)
-                self.samples = samples
-
-            self.method = 'experimental nuclear resonance vibrational spectroscopy'
-            if self.instruments is None or self.instruments == []:
-                instrument = InstrumentReference()
-                instrument.name = 'NRVS setup'
-                instrument.lab_id = 'NRVS-setup'
-                from nomad.datamodel.context import ClientContext
-                if isinstance(archive.m_context, ClientContext):
-                    pass
-                else:
-                    instrument.normalize(archive, logger)
-                instruments = []
-                instruments.append(instrument)
-                self.instruments = instruments
-        elif self.data_file.endswith('_NRVS_sim.dat'):
-            self.method = 'simulated nuclear resonance vibrational spectroscopy'
+            if self.data_file.endswith('_NRVS_exp.dat'):
+                sample_name = str(self.data_file).split('_NRVS')
+                if self.samples is None or self.samples == []:
+                    sample = CompositeSystemReference()
+                    sample.name = sample_name[0]
+                    sample.lab_id = sample_name[0]
+                    from nomad.datamodel.context import ClientContext
+                    if isinstance(archive.m_context, ClientContext):
+                        pass
+                    else:
+                        sample.normalize(archive, logger)
+                    samples = []
+                    samples.append(sample)
+                    self.samples = samples
+
+                self.method = 'experimental nuclear resonance vibrational spectroscopy'
+                if self.instruments is None or self.instruments == []:
+                    instrument = InstrumentReference()
+                    instrument.name = 'NRVS setup'
+                    instrument.lab_id = 'NRVS-setup'
+                    from nomad.datamodel.context import ClientContext
+                    if isinstance(archive.m_context, ClientContext):
+                        pass
+                    else:
+                        instrument.normalize(archive, logger)
+                    instruments = []
+                    instruments.append(instrument)
+                    self.instruments = instruments
+            elif self.data_file.endswith('_NRVS_sim.dat'):
+                self.method = 'simulated nuclear resonance vibrational spectroscopy'
 
         self.figures = []
-
         fig = px.line(x=data['wavenumber, cm-1'], y=data['57Fe PVDOS'])
         fig.update_xaxes(title_text=col_names[0])
         fig.update_yaxes(title_text=col_names[1])