fixed functions and tested after ruff formating

docs/how_to/use_api_functions.md

@@ -342,7 +342,7 @@ For example:
 
 ```python
 metadata_new = {'upload_name': 'Test Upload', 'comment': 'This is a test upload...'}
-edit_upload_metadata(upload_id, url='test', **metadata_new)
+edit_upload_metadata(upload_id, url='test', upload_metadata=metadata_new)
 ```
 
 ??? success "output"
@@ -742,7 +742,7 @@ The returned `dataset_id` can then be used to add individual entries (or all ent
 
 ```python
 metadata_new = {'dataset_id': dataset_id}
-edit_upload_metadata(upload_id, url='test', **metadata_new)
+edit_upload_metadata(upload_id, url='test', upload_metadata=metadata_new)
 ```
 
 ??? success "output"
@@ -828,7 +828,7 @@ Alternatively, you can search for datasets, e.g., by `user_id` or `dataset_name`
 
 ```python
 my_datasets = retrieve_datasets(
-    user_id=nomad_user_me.user_id, url='test', max_datasets=20
+    dataset_params={'user_id': nomad_user_me.user_id, 'max_datasets': 20}, url='test'
 )
 pprint(my_datasets)
 ```
@@ -851,7 +851,7 @@ To get the list of entries contained within a dataset, use `query_entries()`:
 
 
 ```python
-dataset_entries = query_entries(dataset_id=dataset_id, url='test')
+dataset_entries = query_entries(query_params={'dataset_id': dataset_id}, url='test')
 for entry in dataset_entries:
     pprint(f'entry_id={entry.entry_id}, upload_id={entry.upload_id}')
 ```

src/nomad_utility_workflows/utils/datasets.py

@@ -61,7 +61,9 @@ def retrieve_datasets(
     url: str = None,
 ) -> list[NomadDataset]:
     parameters = []
-    max_datasets = dataset_params.pop('max_datasets')
+    max_datasets = dataset_params.pop(
+        'max_datasets', default_dataset_params['max_datasets']
+    )
     for key, value in dataset_params.items():
         parameters.append(f'{key}={value}')
     url = get_nomad_url(url)

src/nomad_utility_workflows/utils/entries.py

@@ -213,7 +213,9 @@ def get_entries_of_my_uploads(
     ]
 
 
-@ttl_cache(maxsize=128, ttl=180)
+# @ttl_cache(maxsize=128, ttl=180)
+# ! Had to remove caching because of the use of dict as input
+# ! which was required to reduce the number of inputs for ruff
 def query_entries(
     query_params: QueryParams = default_query_params.copy(),
     url: str = None,

src/nomad_utility_workflows/utils/uploads.py

@@ -191,9 +191,10 @@ def edit_upload_metadata(
     url_name = get_nomad_url_name(url)
     logger.info('editing the metadata for upload %s on %s server', upload_id, url_name)
     metadata = {'metadata': {}}
+    if 'dataset_id' in upload_metadata.keys():
+        upload_metadata['datasets'] = upload_metadata.pop('dataset_id')
     for key, value in upload_metadata.items():
         metadata['metadata'][key] = value
-
     response = post_nomad_request(
         RequestOptions(
             section=f'/uploads/{upload_id}/edit',