Add workflow for checking against NOMAD dependencies #8
Workflow file for this run
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| name: Validate Dependencies Compatibility | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| jobs: | ||
| validate_dependencies: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout pynxtools | ||
| uses: actions/checkout@v2 | ||
| - name: Checkout NOMAD from GitLab | ||
| with: | ||
| submodules: 'recursive' | ||
| run: | | ||
|
Check failure on line 22 in .github/workflows/nomad-requirements.yml
|
||
| git clone https://gitlab.mpcdf.mpg.de/nomad-lab/nomad-FAIR.git nomad | ||
| cd nomad | ||
| git checkout develop | ||
| - name: Replace pynxtools dependency in NOMAD pyproject.toml | ||
| run: | | ||
| sed -i 's|pynxtools\[convert\]==0.3.1|pynxtools\[convert\]@git+https://github.com/FAIRmat-NFDI/pynxtools.git@${{ github.head_ref }}|' pyproject.toml | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: '3.9' | ||
| - name: Install uv | ||
| run: | | ||
| curl -LsSf https://astral.sh/uv/install.sh | sh | ||
| - name: Generate (dev-)requirements.txt from modified pyproject.toml | ||
| run: | | ||
| uv pip compile -p 3.9 --annotation-style=line --extra=infrastructure --extra=parsing --output-file=requirements.txt dependencies/nomad-dos-fingerprints/pyproject.toml dependencies/parsers/eelsdb/pyproject.toml pyproject.toml | ||
| uv pip compile -p 3.9 --annotation-style=line --extra=dev --extra=infrastructure --extra=parsing --output-file=requirements-dev.txt requirements.txt pyproject.toml | ||
| - name: Install NOMAD dependencies with pynxtools from current branch | ||
| run: | | ||
| uv pip install --system -r requirements.txt | ||
| uv pip install --system -r requirements-dev.txt | ||
| env: | ||
| PYTHONPATH: "" # Ensure no pre-installed packages interfere with the test | ||
| - name: Run Tests | ||
| run: | | ||
| pytest | ||
