V1.3 (#285)

* Add BisampleMeta_ncbi
Changes to be committed:
	new file:   data_files/biosampleMeta_ncbi.tsv

* Fixes for Review

[Fixes for Review](#230 (comment))
Changes to be committed:
	modified:   data_files/biosampleMeta_ncbi.tsv

* v1.3 Data data_dictionary
Changes to be committed:
	new file:   data_dictionary/v1.3/README.tsv
	new file:   data_dictionary/v1.3/core_property_list.tsv
	new file:   data_dictionary/v1.3/non-core_property_list.tsv
	new file:   data_dictionary/v1.3/property_definition.tsv
	new file:   data_dictionary/v1.3/release_notes.tsv
	new file:   schema/v1.3/core/.json
	new file:   schema/v1.3/core/assemblyQC.json
	new file:   schema/v1.3/core/assemblyQC_NCBI.json
	new file:   schema/v1.3/core/biosampleMeta.json
	new file:   schema/v1.3/core/ngsQC.json
	new file:   schema/v1.3/core/ngsQC_NCBI.json
	new file:   schema/v1.3/core/siteQC.json
	new file:   schema/v1.3/non-core/.json
	new file:   schema/v1.3/non-core/SRA_biosample.json
	new file:   schema/v1.3/non-core/ngs_ID_list.json
	new file:   schema/v1.3/non-core/sars-cov-2_lineage_mutations.json
	new file:   schema/v1.3/non-core/uniprot-proteome_*.json

* After Tests
Changes to be committed:
	new file:   lib/test_file_generation.sh
	new file:   tests/v1.3/test_files/NC_045512_SARS-CoV-2_Wuhan.fasta
	new file:   tests/v1.3/test_files/UP000001014_99287.fasta
	new file:   tests/v1.3/test_files/UP000001014_99287_DNA.fasta
	new file:   tests/v1.3/test_files/UP000009255_211044.fasta
	new file:   tests/v1.3/test_files/UP000009255_211044_DNA.fasta
	new file:   tests/v1.3/test_files/UP000009255_proteome_genome_metadata.csv
	new file:   tests/v1.3/test_files/UP000180448_33727.fasta
	new file:   tests/v1.3/test_files/UP000180448_33727_DNA.fasta
	new file:   tests/v1.3/test_files/UP000464024_2697049.fasta
	new file:   tests/v1.3/test_files/UP000464024_2697049_DNA.fasta
	new file:   tests/v1.3/test_files/assemblyQC_HIVE.tsv
	new file:   tests/v1.3/test_files/assemblyQC_NCBI.tsv
	new file:   tests/v1.3/test_files/biosampleMeta_HIVE.tsv
	new file:   tests/v1.3/test_files/biosampleMeta_ncbi.tsv
	new file:   tests/v1.3/test_files/core_property_list.tsv
	new file:   tests/v1.3/test_files/ngsQC_HIVE.tsv
	new file:   tests/v1.3/test_files/ngsQC_NCBI.tsv
	new file:   tests/v1.3/test_files/ngsQC_PL.tsv
	new file:   tests/v1.3/test_files/ngs_id_list.tsv
	new file:   tests/v1.3/test_files/non-core_property_list.tsv
	new file:   tests/v1.3/test_files/property_definition.tsv
	new file:   tests/v1.3/test_files/reference-guided_genome_assemblies_Galaxy.fasta
	new file:   tests/v1.3/test_files/reference-guided_genome_assemblies_HIVE-Hexagon.fasta
	new file:   tests/v1.3/test_files/sars-cov-2_lineage_mutations.tsv
	new file:   tests/v1.3/test_files/siteQC_HIVE.tsv
	new file:   tests/v1.3/test_files/temp_archive
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000001014.csv
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000180448.csv
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000464024.csv
	new file:   tests/v1.3/test_results/assemblyQC_HIVE.json
	new file:   tests/v1.3/test_results/assemblyQC_NCBI.json
	new file:   tests/v1.3/test_results/biosampleMeta_HIVE.json
	new file:   tests/v1.3/test_results/biosampleMeta_ncbi.json
	new file:   tests/v1.3/test_results/core_property_list.json

* README
Changes to be committed:
	new file:   data_dictionary/README.md

data_dictionary/README.md

@@ -0,0 +1,6 @@
+# FDA-ARGOS Data Dictionary
+
+## To generate the Schema files
+
+run 
+`python lib/dictionary_utils.py write_schema -i data_dictionary/[current version]/non-core_property_list.tsv -d schema/[current version]/non-core/ -f data_dictionary/[current version]/property_definition.tsv`

data_dictionary/v1.3/README.tsv

@@ -0,0 +1,37 @@
+This page:	V1.3_argos_dict
+
+property definition	
+column header	data
+Property	consensus name for data property described in row
+Name in Files	Alternate names for data property in existing datasets
+Data Files	A `|` separated list of dataset names where this property is utilized
+recommended	Ther person or resource that suggested using the property
+Description	A definition and additional information about the property.
+source/type def	The data source for obtaining the property.
+
+core property list	
+column header	data
+Property	consensus name for data property described in row
+Data Object Type	The dataset this property is used in
+Optional/Required	indicates if the property is REQUIRED to hava a valid data row
+$id	For JSON schema conversion
+Title	Human readable name for property. Default is the same as property.
+Type	property type as defined by JSON types
+default	a default value for property
+examples	and example for the property
+pattern	the regular expression evaluation for this property
+description	A definition and additional information about the property.
+
+annotation property list	
+column header	data
+Property	consensus name for data property described in row
+Data Object Type	The dataset this property is used in
+Optional/Required	indicates if the property is REQUIRED to hava a valid data row
+$id	For JSON schema conversion
+Title	Human readable name for property. Default is the same as property.
+Type	property type as defined by JSON types
+default	a default value for property
+examples	and example for the property
+pattern	the regular expression evaluation for this property
+description	A definition and additional information about the property.
+