Data associated with publication of method detailing DNA, RNA and protein co-extraction method from soil and other complex environmental samples.
To render the Krona HTML files interactive without downloading, please prepend http://htmlpreview.github.com/? to the URL of the HTML files.
Or, this has been done below creating clickable links to each of the relevant Krona plots:
Soil 2 DNA (16S rRNA profiling): http://htmlpreview.github.io/?https://github.com/FEMLab/DNA-RNA-Protein-Coextraction-Method-Soil/blob/master/Krona-Soil2-DNA.html
Soil 2 cDNA (16S rRNA profiling): http://htmlpreview.github.io/?https://github.com/FEMLab/DNA-RNA-Protein-Coextraction-Method-Soil/blob/master/Krona-Soil2-cDNA.html
Soils 2, 4 and 8 Metaproteome (viewing function per taxonomic group): http://htmlpreview.github.io/?https://github.com/FEMLab/DNA-RNA-Protein-Coextraction-Method-Soil/blob/master/Krona-Soils2_4_8_Protein_FunctionByTaxonomy.html
Soils 2, 4 and 8 Metaproteome (viewing taxonomic group per function): http://htmlpreview.github.io/?https://github.com/FEMLab/DNA-RNA-Protein-Coextraction-Method-Soil/blob/master/Krona-Soils2_4_8_Protein_TaxonomyByFunction.html
Scripts for analysis of the 16S rRNA data using Mothur (Schloss et al., 2009) can be found in the file 'MothurSOP-CoEx.txt'