Implement PACS list API endpoint based on a new PFDCM microservice #532
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| name: CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| tags: | |
| - 'v[0-9]+.[0-9]+.[0-9]+*' | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| test: | |
| if: github.ref_type == 'branch' || github.ref_name == 'pull_request' | |
| runs-on: ubuntu-24.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| engine: [ 'docker', 'podman' ] | |
| test-kind: [ 'unit', 'integration' ] | |
| steps: | |
| - name: Start podman daemon | |
| if: matrix.engine == 'podman' | |
| run: systemctl --user start podman.service | |
| - uses: taiki-e/install-action@just | |
| - uses: actions/checkout@v4 | |
| - name: Run ${{ matrix.test-kind }} tests on ${{ matrix.engine }} | |
| uses: ./ | |
| with: | |
| engine: ${{ matrix.engine }} | |
| command: test-${{ matrix.test-kind }} | |
| build: | |
| name: Build | |
| if: github.event_name == 'push' | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Update __version__.py | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| run: echo '__version__ = "${GITHUB_REF_NAME:1}"' > chris_backend/__version__.py | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| docker.io/fnndsc/cube | |
| ghcr.io/fnndsc/cube | |
| tags: | | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| - uses: docker/setup-qemu-action@v3 | |
| - uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| push: true | |
| context: . | |
| file: ./Dockerfile | |
| platforms: linux/amd64,linux/arm64 | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - name: Update Docker Hub description | |
| uses: peter-evans/dockerhub-description@v4 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| short-description: ChRIS backend | |
| readme-filepath: ./README.md | |
| repository: fnndsc/cube | |
| openapi: | |
| name: Generate OpenAPI Schema | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - uses: taiki-e/install-action@just | |
| - uses: actions/checkout@v4 | |
| - name: Update __version__.py | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| run: echo '__version__ = "${GITHUB_REF_NAME:1}"' > chris_backend/__version__.py | |
| - run: just prefer docker | |
| - run: just build | |
| - name: Generate OpenAPI schema (correct) | |
| run: just openapi 2> spectacular.log > schema.yaml || (cat spectacular.log; exit 1) | |
| - name: Generate OpenAPI schema (split) | |
| run: just openapi-split 2> spectacular_split.log > schema_split.yaml || (cat spectacular_split.log; exit 1) | |
| - name: Upload schema YAML files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: openapi_schema | |
| path: schema*.yaml | |
| if-no-files-found: error | |
| - name: Assert no drf-spectacular errors nor warnings | |
| run: | | |
| for f in spectacular*.log; do | |
| if grep -qi '(warning|error)' $f; then | |
| cat $f | |
| exit 1 | |
| fi | |
| done | |
| - name: Stop services | |
| run: just down | |
| build-docs: | |
| name: Generate OpenAPI Documentation | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: openapi | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: openapi_schema | |
| - name: Install the OpenAPI Generator | |
| run: npm install @openapitools/openapi-generator-cli -g | |
| - name: Generate html2 | |
| run: | | |
| openapi-generator-cli generate -i schema_split.yaml -g html2 -o dist \ | |
| -p [email protected],infoUrl=https://chrisproject.org \ | |
| -p licenseInfo=MIT \ | |
| -p licenseUrl=${{ github.server_url }}/${{ github.repository }}/blob/${{ github.sha }}/LICENSE \ | |
| -p pythonPackageName=chris_oag | |
| - name: Upload pages artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: ./dist | |
| deploy-docs: | |
| name: Update GitHub Pages | |
| needs: build-docs | |
| runs-on: ubuntu-24.04 | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| # Deploy to the github-pages environment | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| draft-release: | |
| name: Draft GitHub Release | |
| runs-on: ubuntu-24.04 | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: | |
| - build | |
| - openapi | |
| steps: | |
| - id: version | |
| run: echo "version=${GITHUB_REF_NAME:1}" >> "$GITHUB_OUTPUT" | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: openapi_schema | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| draft: true | |
| prerelease: ${{ contains( github.ref_name, '-' ) }} | |
| files: '*.yaml' | |
| fail_on_unmatched_files: true | |
| name: CUBE - version ${{ steps.version.outputs.version }} | |
| generate_release_notes: true | |
| body: | | |
| ## Getting the Image | |
| Using [Podman](https://podman.io): | |
| ```shell | |
| podman pull ghcr.io/fnndsc/cube:${{ steps.version.outputs.version }} | |
| ``` | |
| Using [Docker](https://docker.com): | |
| ```shell | |
| docker pull ghcr.io/fnndsc/cube:${{ steps.version.outputs.version }} | |
| ``` |