FRML-27 Fix Inconsistent Watershed Result #5

Eve-ning · 2023-09-28T07:26:38Z

Major Changes

Fixed issue with watershed using incorrectly signed array
Enforced Bounds to use Rect, a namedtuple for consistent extraction of coords
Add remove_small_segments_from_labels to pre-remove labels to reduce memory
Update watershed default values to match my original paper

This is to improve performance and reduce memory used during segment extraction

remove_small_segments_from_labels

Eve-ning added 12 commits September 28, 2023 14:13

Force explicit bounds naming with Rect

4ba49af

Implement small segment removal function

ef4cea5

This is to improve performance and reduce memory used during segment extraction

Update extract segments from bounds to use Rect

fa92877

Explicitly yield bounds from rect

bae6d8a

Optimize segment extraction, skip whole ar copy

0b73aed

Fix incorrect watershed signage

dc2f4b6

Fix incorrect arg order

305aed5

Update default values to match my paper

ff7c9cb

Update return signature of bounds

d38ce91

Fix test compute_labels peak being too large

0800692

Add test for new function

7106771

remove_small_segments_from_labels

Expose remove_small_segments_from_labels

9392bdc

Eve-ning changed the title ~~Fix Inconsistent Watershed Result~~ FRML-27 Fix Inconsistent Watershed Result Sep 28, 2023

Eve-ning merged commit 26a509c into main Sep 28, 2023

Eve-ning deleted the fix-inconsistent-watershed branch September 28, 2023 07:29

Eve-ning added this to the v0.0.2 milestone Oct 20, 2023

Eve-ning self-assigned this Oct 20, 2023