Update BGCdetection.py

Finn-Lab · Mar 31, 2023 · dcb3cc8 · dcb3cc8
1 parent ecbfd46
commit dcb3cc8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/sanntis/modules/BGCdetection.py b/sanntis/modules/BGCdetection.py
@@ -69,7 +69,7 @@ def transformIPS(self, ipsFile):
                             spl[11] if spl[11] != '-' else spl[4]
                         )
                     except IndexError:
-                        log.warning(f"WARNING. Incorrect number of fields in some lines of InterProScan TSV. check IPS version. FILE: {ipsFile} line: {line}.")
+                        log.warning(f"WARNING. Incorrect number of fields in some lines of InterProScan TSV. check IPS version. FILE: {ipsFile} line: {l}.")
                 if fmt == "gff":
                     spl = l.split("\t")
                     if len(spl) > 3 and spl[2]=='protein_match':