Transpose spectral band output arrays #127
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests for JANUS | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup system | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev netcdf-bin | |
| - name: Get SOCRATES | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'nichollsh/SOCRATES' | |
| path: 'SOCRATES' | |
| - uses: actions/cache@v3 | |
| id: cache-socrates | |
| with: | |
| path: | | |
| SOCRATES/bin | |
| SOCRATES/sbin | |
| SOCRATES/set_rad_env | |
| key: socrates-${{ hashFiles('SOCRATES/version') }} | |
| - name: Build SOCRATES | |
| if: steps.cache-socrates.outputs.cache-hit != 'true' | |
| run: | | |
| export LD_LIBRARY_PATH="" | |
| cd SOCRATES | |
| ./configure | |
| ./build_code | |
| cd .. | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: cache-virtualenv | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} | |
| - name: Build JANUS | |
| if: steps.cache-virtualenv.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install -e .[develop] | |
| - uses: actions/cache@v3 | |
| id: cache-fwl-data | |
| with: | |
| path: /home/runner/work/fwl_data | |
| key: fwl-data-1 | |
| - name: Test with pytest | |
| run: | | |
| export FWL_DATA="/home/runner/work/fwl_data" | |
| export RAD_DIR="/home/runner/work/JANUS/JANUS/SOCRATES" | |
| coverage run -m pytest | |
| - name: Report coverage | |
| run: | | |
| coverage json | |
| export TOTAL=$(python -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| echo "### Total coverage: ${TOTAL}%" >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| coverage report >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| - name: Make coverage badge | |
| if: ${{ github.ref == 'refs/heads/master' && matrix.python-version == '3.10' }} | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.GIST_TOKEN }} | |
| gistID: 99391a66bb9229771504c3a4db611d05 | |
| filename: covbadge.svg | |
| label: Coverage | |
| message: ${{ env.total }}% | |
| minColorRange: 50 | |
| maxColorRange: 90 | |
| valColorRange: ${{ env.total }} |