Add integration test for PROTEUS #78
Workflow file for this run
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| name: Tests for PROTEUS | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| if: github.event.pull_request.draft == false | |
| name: Run Coverage and Tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| env: | |
| FWL_DATA: /home/runner/work/fwl_data | |
| RAD_DIR: ./SOCRATES | |
| SOCRATES: ./SOCRATES # https://github.com/FormingWorlds/JANUS/issues/51 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'false' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: cache-virtualenv | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} | |
| - name: Install dependencies | |
| if: steps.cache-virtualenv.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install -e .[develop] | |
| - name: Install JANUS+MORS | |
| run: | | |
| python -m pip install git+https://github.com/FormingWorlds/MORS | |
| python -m pip install git+https://github.com/FormingWorlds/JANUS | |
| - name: Setup system for SOCRATES/SPIDER | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev netcdf-bin petsc-dev | |
| # - name: Get SOCRATES | |
| # uses: actions/checkout@v4 | |
| # with: | |
| # repository: 'FormingWorlds/SOCRATES' | |
| # path: 'SOCRATES' | |
| # - uses: actions/cache@v3 | |
| # id: cache-socrates | |
| # with: | |
| # path: | | |
| # SOCRATES/bin | |
| # SOCRATES/sbin | |
| # SOCRATES/set_rad_env | |
| # key: socrates-${{ hashFiles('SOCRATES/version') }} | |
| # - name: Build SOCRATES | |
| # if: steps.cache-socrates.outputs.cache-hit != 'true' | |
| # run: | | |
| # export LD_LIBRARY_PATH="" | |
| # cd SOCRATES | |
| # ./configure | |
| # ./build_code | |
| # cd .. | |
| - name: Get SPIDER | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'djbower/SPIDER' | |
| path: 'SPIDER' | |
| # - uses: actions/cache@v3 | |
| # id: cache-spider | |
| # with: | |
| # path: | | |
| # ... | |
| # key: spider-${{ hashFiles('SPIDER/version') }} | |
| - name: Build SPIDER | |
| # if: steps.cache-spider.outputs.cache-hit != 'true' | |
| run: | | |
| cd SPIDER | |
| export PETSC_DIR="/usr/lib/petsc" | |
| export PETSC_ARCH="arch-linux-c-opt" | |
| make -j | |
| cd .. | |
| - uses: actions/cache@v3 | |
| id: cache-fwl-data | |
| with: | |
| path: ${{ env.FWL_DATA }} | |
| key: fwl-data-2 | |
| - name: Pre-download fwl data | |
| if: steps.cache-fwl-data.cache-hit != 'true' | |
| run: | | |
| mors download all | |
| janus download stellar | |
| janus download spectral | |
| janus download spectral -n Frostflow -b 48 | |
| - name: Test with pytest | |
| run: | | |
| source PROTEUS.env | |
| coverage run -m pytest | |
| - name: Report coverage | |
| run: | | |
| coverage json | |
| export TOTAL=$(python -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| echo "### Total coverage: ${TOTAL}%" >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| coverage report >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| - name: Make coverage badge | |
| if: ${{ github.ref == 'refs/heads/master' && matrix.python-version == '3.10' }} | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.GIST_TOKEN }} | |
| gistID: b4ee7dab92e20644bcb3a5ad09f71165 | |
| filename: covbadge.svg | |
| label: Coverage | |
| message: ${{ env.total }}% | |
| minColorRange: 50 | |
| maxColorRange: 90 | |
| valColorRange: ${{ env.total }} |