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Updated template params file for modified Omero parameters
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folterj committed Feb 9, 2024
1 parent 742a4a9 commit 05f15fa
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions resources/params.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9,16 +9,18 @@ input:
host: ssl://omero.server
# include - Omero project id(s) / dataset id(s) / image id(s) to include
include:
dummy: dummy
project: [0, 1]
dataset: [0, 1]
image: [0, 1]
regex: []
# exclude - Omero project id(s) / dataset id(s) / image id(s) to exclude
exclude:
dummy: dummy
project: [0, 1]
dataset: [0, 1]
image: [0, 1]
# labels - required Omero metadata labels (optional)
#labels: [label1,label2]
regex: []
# pixel_size - source magnification (if not in metadata)
#pixel_size: 1

Expand All @@ -41,7 +43,7 @@ output:
# npyramid_add - number of pyramid size levels to add
npyramid_add: 3
# pyramid_downsample - factor each pyramid level is down-sampled
pyramid_downsample: 4.0
pyramid_downsample: 2
# thumbnail_size - can be a factor between 0 and 1 or maximum pixel size (single value)
thumbnail_size: 1000
csv: resources/csv/labels.csv
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