Code

Single threaded optimization#15

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Merged

cansavvy merged 8 commits intomainFredHutch/pgmap:mainfrom optimizationFredHutch/pgmap:optimizationCopy head branch name to clipboardJan 16, 2025

+50-23

Commits

Commits on Jan 6, 2025

• Do fastx parsing without seqio

  marissafujimoto

  committed
  780b30c

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Commits on Jan 7, 2025

• Switch to Levenshtein package for alignment functions

  marissafujimoto

  committed
  73ad242

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Commits on Jan 15, 2025

• Merge branch 'main' into optimization

  cansavvy

  committed
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• Update requirements.txt

  cansavvy

  committed
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• Update readme partially

  cansavvy

  committed
  81d008e

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• Don't even worry about 3.9

  cansavvy

  committed
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Commits on Jan 16, 2025

• Got rid of editdistance

  cansavvy

  committed
  2024ae0

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• Merge pull request #17 from FredHutch/cansavvy/requirements

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  cansavvy

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