Skip to content

Commit

Permalink
v1.2.0
Browse files Browse the repository at this point in the history
  • Loading branch information
@phoeguo
phoeguo committed Sep 10, 2024
1 parent ddd7371 commit 3c4bfcb
Show file tree
Hide file tree
Showing 2 changed files with 30 additions and 18 deletions.
2 changes: 1 addition & 1 deletion README.md
View file
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# <a name="top"></a>G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram

**Date: 2024-07-26**
**Date: 2024-09-04**

[![Build Status](https://travis-ci.org/G3viz/g3viz.svg?branch=master)](https://travis-ci.org/G3viz/g3viz)
[![CRAN_version](http://www.r-pkg.org/badges/version/g3viz)](https://cran.r-project.org/package=g3viz)
Expand Down
46 changes: 29 additions & 17 deletions docs/index.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4079,25 +4079,37 @@ <h1><span class="header-section-number">5</span> Session Info</h1>
<span id="cb10-10"><a href="#cb10-10" tabindex="-1"></a><span class="co">#&gt; [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8</span></span>
<span id="cb10-11"><a href="#cb10-11" tabindex="-1"></a><span class="co">#&gt; </span></span>
<span id="cb10-12"><a href="#cb10-12" tabindex="-1"></a><span class="co">#&gt; attached base packages:</span></span>
<span id="cb10-13"><a href="#cb10-13" tabindex="-1"></a><span class="co">#&gt; [1] stats graphics grDevices utils datasets methods base </span></span>
<span id="cb10-13"><a href="#cb10-13" tabindex="-1"></a><span class="co">#&gt; [1] stats4 stats graphics grDevices utils datasets methods base </span></span>
<span id="cb10-14"><a href="#cb10-14" tabindex="-1"></a><span class="co">#&gt; </span></span>
<span id="cb10-15"><a href="#cb10-15" tabindex="-1"></a><span class="co">#&gt; other attached packages:</span></span>
<span id="cb10-16"><a href="#cb10-16" tabindex="-1"></a><span class="co">#&gt; [1] kableExtra_1.4.0 knitr_1.48 rmarkdown_2.28 g3viz_1.2.0 </span></span>
<span id="cb10-17"><a href="#cb10-17" tabindex="-1"></a><span class="co">#&gt; </span></span>
<span id="cb10-18"><a href="#cb10-18" tabindex="-1"></a><span class="co">#&gt; loaded via a namespace (and not attached):</span></span>
<span id="cb10-19"><a href="#cb10-19" tabindex="-1"></a><span class="co">#&gt; [1] KEGGREST_1.36.3 xfun_0.47 httr2_1.0.3 bslib_0.8.0 colorspace_2.1-1 </span></span>
<span id="cb10-20"><a href="#cb10-20" tabindex="-1"></a><span class="co">#&gt; [6] vctrs_0.6.5 htmltools_0.5.8.1 stats4_4.2.1 viridisLite_0.4.2 yaml_2.3.10 </span></span>
<span id="cb10-21"><a href="#cb10-21" tabindex="-1"></a><span class="co">#&gt; [11] blob_1.2.4 rlang_1.1.2 jquerylib_0.1.4 glue_1.7.0 DBI_1.2.3 </span></span>
<span id="cb10-22"><a href="#cb10-22" tabindex="-1"></a><span class="co">#&gt; [16] rappdirs_0.3.3 BiocGenerics_0.42.0 bit64_4.0.5 GenomeInfoDbData_1.2.8 lifecycle_1.0.4 </span></span>
<span id="cb10-23"><a href="#cb10-23" tabindex="-1"></a><span class="co">#&gt; [21] stringr_1.5.1 zlibbioc_1.42.0 Biostrings_2.64.1 munsell_0.5.1 htmlwidgets_1.6.4 </span></span>
<span id="cb10-24"><a href="#cb10-24" tabindex="-1"></a><span class="co">#&gt; [26] memoise_2.0.1 evaluate_0.24.0 Biobase_2.56.0 IRanges_2.30.1 fastmap_1.2.0 </span></span>
<span id="cb10-25"><a href="#cb10-25" tabindex="-1"></a><span class="co">#&gt; [31] GenomeInfoDb_1.32.4 curl_5.2.1 AnnotationDbi_1.58.0 highr_0.11 Rcpp_1.0.13 </span></span>
<span id="cb10-26"><a href="#cb10-26" tabindex="-1"></a><span class="co">#&gt; [36] scales_1.3.0 cachem_1.1.0 org.Hs.eg.db_3.15.0 S4Vectors_0.34.0 jsonlite_1.8.8 </span></span>
<span id="cb10-27"><a href="#cb10-27" tabindex="-1"></a><span class="co">#&gt; [41] XVector_0.36.0 systemfonts_1.1.0 bit_4.0.5 png_0.1-8 digest_0.6.37 </span></span>
<span id="cb10-28"><a href="#cb10-28" tabindex="-1"></a><span class="co">#&gt; [46] stringi_1.8.4 cli_3.6.3 tools_4.2.1 bitops_1.0-8 magrittr_2.0.3 </span></span>
<span id="cb10-29"><a href="#cb10-29" tabindex="-1"></a><span class="co">#&gt; [51] sass_0.4.9 RCurl_1.98-1.13 RSQLite_2.3.7 crayon_1.5.3 pkgconfig_2.0.3 </span></span>
<span id="cb10-30"><a href="#cb10-30" tabindex="-1"></a><span class="co">#&gt; [56] xml2_1.3.6 svglite_2.1.3 httr_1.4.7 rstudioapi_0.16.0 R6_2.5.1 </span></span>
<span id="cb10-31"><a href="#cb10-31" tabindex="-1"></a><span class="co">#&gt; [61] compiler_4.2.1</span></span></code></pre></div>
<span id="cb10-16"><a href="#cb10-16" tabindex="-1"></a><span class="co">#&gt; [1] cBioPortalData_2.8.2 MultiAssayExperiment_1.22.0 SummarizedExperiment_1.26.1 Biobase_2.56.0 </span></span>
<span id="cb10-17"><a href="#cb10-17" tabindex="-1"></a><span class="co">#&gt; [5] GenomicRanges_1.48.0 GenomeInfoDb_1.32.4 IRanges_2.30.1 S4Vectors_0.34.0 </span></span>
<span id="cb10-18"><a href="#cb10-18" tabindex="-1"></a><span class="co">#&gt; [9] BiocGenerics_0.42.0 MatrixGenerics_1.8.1 matrixStats_1.3.0 AnVIL_1.8.7 </span></span>
<span id="cb10-19"><a href="#cb10-19" tabindex="-1"></a><span class="co">#&gt; [13] dplyr_1.1.4 kableExtra_1.4.0 knitr_1.48 rmarkdown_2.28 </span></span>
<span id="cb10-20"><a href="#cb10-20" tabindex="-1"></a><span class="co">#&gt; [17] g3viz_1.2.0 </span></span>
<span id="cb10-21"><a href="#cb10-21" tabindex="-1"></a><span class="co">#&gt; </span></span>
<span id="cb10-22"><a href="#cb10-22" tabindex="-1"></a><span class="co">#&gt; loaded via a namespace (and not attached):</span></span>
<span id="cb10-23"><a href="#cb10-23" tabindex="-1"></a><span class="co">#&gt; [1] bitops_1.0-8 bit64_4.0.5 progress_1.2.3 filelock_1.0.3 httr_1.4.7 </span></span>
<span id="cb10-24"><a href="#cb10-24" tabindex="-1"></a><span class="co">#&gt; [6] GenomicDataCommons_1.20.3 bslib_0.8.0 tools_4.2.1 utf8_1.2.4 R6_2.5.1 </span></span>
<span id="cb10-25"><a href="#cb10-25" tabindex="-1"></a><span class="co">#&gt; [11] DBI_1.2.3 colorspace_2.1-1 prettyunits_1.2.0 tidyselect_1.2.1 TCGAutils_1.16.1 </span></span>
<span id="cb10-26"><a href="#cb10-26" tabindex="-1"></a><span class="co">#&gt; [16] bit_4.0.5 curl_5.2.1 compiler_4.2.1 rvest_1.0.4 httr2_1.0.3 </span></span>
<span id="cb10-27"><a href="#cb10-27" tabindex="-1"></a><span class="co">#&gt; [21] cli_3.6.3 formatR_1.14 xml2_1.3.6 DelayedArray_0.22.0 sass_0.4.9 </span></span>
<span id="cb10-28"><a href="#cb10-28" tabindex="-1"></a><span class="co">#&gt; [26] rtracklayer_1.56.1 scales_1.3.0 readr_2.1.5 rappdirs_0.3.3 rapiclient_0.1.6 </span></span>
<span id="cb10-29"><a href="#cb10-29" tabindex="-1"></a><span class="co">#&gt; [31] RCircos_1.2.2 Rsamtools_2.12.0 systemfonts_1.1.0 stringr_1.5.1 digest_0.6.37 </span></span>
<span id="cb10-30"><a href="#cb10-30" tabindex="-1"></a><span class="co">#&gt; [36] svglite_2.1.3 XVector_0.36.0 pkgconfig_2.0.3 htmltools_0.5.8.1 highr_0.11 </span></span>
<span id="cb10-31"><a href="#cb10-31" tabindex="-1"></a><span class="co">#&gt; [41] dbplyr_2.5.0 fastmap_1.2.0 limma_3.52.4 htmlwidgets_1.6.4 rlang_1.1.2 </span></span>
<span id="cb10-32"><a href="#cb10-32" tabindex="-1"></a><span class="co">#&gt; [46] rstudioapi_0.16.0 RSQLite_2.3.7 jquerylib_0.1.4 BiocIO_1.6.0 generics_0.1.3 </span></span>
<span id="cb10-33"><a href="#cb10-33" tabindex="-1"></a><span class="co">#&gt; [51] jsonlite_1.8.8 BiocParallel_1.30.4 RCurl_1.98-1.13 magrittr_2.0.3 GenomeInfoDbData_1.2.8 </span></span>
<span id="cb10-34"><a href="#cb10-34" tabindex="-1"></a><span class="co">#&gt; [56] futile.logger_1.4.3 Matrix_1.5-4.1 Rcpp_1.0.13 munsell_0.5.1 fansi_1.0.6 </span></span>
<span id="cb10-35"><a href="#cb10-35" tabindex="-1"></a><span class="co">#&gt; [61] lifecycle_1.0.4 yaml_2.3.10 stringi_1.8.4 RaggedExperiment_1.20.1 RJSONIO_1.3-1.9 </span></span>
<span id="cb10-36"><a href="#cb10-36" tabindex="-1"></a><span class="co">#&gt; [66] zlibbioc_1.42.0 org.Hs.eg.db_3.15.0 BiocFileCache_2.4.0 grid_4.2.1 blob_1.2.4 </span></span>
<span id="cb10-37"><a href="#cb10-37" tabindex="-1"></a><span class="co">#&gt; [71] parallel_4.2.1 crayon_1.5.3 lattice_0.22-6 Biostrings_2.64.1 splines_4.2.1 </span></span>
<span id="cb10-38"><a href="#cb10-38" tabindex="-1"></a><span class="co">#&gt; [76] GenomicFeatures_1.48.4 hms_1.1.3 KEGGREST_1.36.3 pillar_1.9.0 rjson_0.2.21 </span></span>
<span id="cb10-39"><a href="#cb10-39" tabindex="-1"></a><span class="co">#&gt; [81] codetools_0.2-20 biomaRt_2.52.0 futile.options_1.0.1 XML_3.99-0.16 glue_1.7.0 </span></span>
<span id="cb10-40"><a href="#cb10-40" tabindex="-1"></a><span class="co">#&gt; [86] evaluate_0.24.0 lambda.r_1.2.4 data.table_1.15.4 tzdb_0.4.0 png_0.1-8 </span></span>
<span id="cb10-41"><a href="#cb10-41" tabindex="-1"></a><span class="co">#&gt; [91] vctrs_0.6.5 purrr_1.0.2 tidyr_1.3.1 cachem_1.1.0 xfun_0.47 </span></span>
<span id="cb10-42"><a href="#cb10-42" tabindex="-1"></a><span class="co">#&gt; [96] restfulr_0.0.15 survival_3.7-0 viridisLite_0.4.2 tibble_3.2.1 RTCGAToolbox_2.26.1 </span></span>
<span id="cb10-43"><a href="#cb10-43" tabindex="-1"></a><span class="co">#&gt; [101] GenomicAlignments_1.32.1 AnnotationDbi_1.58.0 memoise_2.0.1</span></span></code></pre></div>
<p><a href="#top">↥ back to top</a></p>
</div>

Expand Down

0 comments on commit 3c4bfcb

Please sign in to comment.