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@genscale-admin genscale-admin released this 29 Jun 12:17
· 218 commits to master since this release
v2.0.0
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[2.0.0] - 2016-06-29

  • Initial release after refactoring the whole code of MindTheGap to use the GATB library.
    Some of the benefits:
  • faster (thanks to GATB improvements in kmer counting!);
  • no longer need to recompile for changing the k parameter;
  • automatic estimation of the paramater abundance-min;
  • more user-friendly usage, with more readable help, progress bars, input-output summaries, etc.
  • compatibility with other GATB tools: input-output graph in h5 format.
  • New features (with respect to the published version, August 2014):
  • detection of homozygous SNPs and deletions (output in a separate VCF file); this should also improve the recall of insertion event detection;
  • a quality score is now associated to each insertion prediction, this enables to filter out some predictions and to obtain a high-confidence subset.

Have a look at a comparison between the published and the 2.0.0 versions on simulated data here.

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