1.1.0

The highlights for this release are:

• The SitesData class has been refactored into Transitions and Jumps, including improved algorithm for jumps calculations. This will make the code more maintainable and easier to extend for the long term.
• Many small api changes to make the code more intuitive and earier to use, for example, many plots are now accessible through class methods
• New methods for calculating and plotting multiple energy paths

What's Changed

• Make orthographic projection for density plot by @AstyLavrinenko in #233
• Return structure with occupancy set as Composition by @stefsmeets in #246
• Improve MSD calculation by @SCiarella in #248
• Turn Jumps.rates and Jumps.activation energies into dataframes by @stefsmeets in #250
• Add peak labels to free energy plots by @SCiarella in #213
• Add option to calculate multiple paths by @SCiarella in #258
• Make user api more intuitive by @stefsmeets in #259
• Make user api more accessible by @stefsmeets in #264
• Calculate transitions with custom radii per site type by @stefsmeets in #265

Under the hood

• Improve jump specification criteria by @v1kko in #228
• jumps calculation: switched joined prerequisites to independent prerequisites by @v1kko in #247
• Add method to extend trajectory by @stefsmeets in #242
• Refactor sites methods/attrs into other classes by @stefsmeets in #251
• Small tweaks to Transitions by @stefsmeets in #256

Bug fixes

• Fix number of sites by type by @AstyLavrinenko in #238
• Fix wrong n_floating bug by @stefsmeets in #253
• Fix RDF test by @stefsmeets in #255

Maintanance

• Fix documentation build by @stefsmeets in #257
• Fix docs build by @stefsmeets in #261

Full Changelog: 1.0.0...1.1.0