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Added some missing packages
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+ alphabetical order, thanks VS Code
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jmlord committed Apr 11, 2024
1 parent 7216f52 commit 32f6357
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4 changes: 4 additions & 0 deletions runners/r-dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,10 @@ RUN sed -e '/[ -z "$PS1" ] && return/s/^/#/g' -i /root/.bashrc

RUN mamba env create -f /data/r-environment.yml

# These packages are not in conda-forge
RUN bash --login -c "mamba activate rbase; R -e 'install.packages(c(\"CoordinateCleaner\", \"geodata\", \"OpenStreetMap\"), repos=\"https://mirror.csclub.uwaterloo.ca/CRAN/\")'"


RUN date +"%Y-%m-%d %R" > /version.txt

###Missing packages coordinatecleaner geodata OpenStreetMap
24 changes: 17 additions & 7 deletions runners/r-environment.yml
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@@ -1,22 +1,32 @@
name: rbase
channels:
- conda-forge
- r
dependencies:
- conda-build
- gdal
- r-abind
- r-base
- r-essentials
- r-rjson
- r-rcurl
- r-rstac
- r-rgbif
- r-curl
- r-devtools
- r-dismo
- r-downloader
- r-enmeval
- r-essentials
- r-gdalcubes
- r-gdalutilities
- r-gdalutils
- r-ggsci
- r-jpeg
- r-landscapemetrics
- r-png
- r-rcurl
- r-rgbif
- r-rjson
- r-rredlist
- r-gdalutilities
- r-gdalcubes
- r-rstac
- r-rstac
- r-sf
- r-stars
- r-terra
- r-tidyselect

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