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Setup the geos python package CI #4

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Jan 18, 2024
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40 changes: 40 additions & 0 deletions .github/workflows/python-package.yml
Original file line number Diff line number Diff line change
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name: geosPythonPackages CI
on: pull_request

# Cancels in-progress workflows for a PR when updated
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true


jobs:
build:

runs-on: ubuntu-22.04
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
package-name: ["geos_ats_package", "geosx_mesh_doctor", "geosx_mesh_tools_package", "geosx_xml_tools_package", "hdf5_wrapper_package", "pygeosx_tools_package", "timehistory_package"]

steps:
- uses: actions/checkout@v3
- uses: mpi4py/setup-mpi@v1
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Do we want to rely on this or should we prefer installing from requirements.txt?

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These help to setup the underlying python and mpi environments (needed for mpi4py to not throw an error). We could probably roll our own, but these actions seem to be quite reliable.

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install package
working-directory: ./${{ matrix.package-name }}
run: |
python -m pip install --upgrade pip
python -m pip install pytest yapf toml
python -m pip install .
# - name: Lint with yapf
# working-directory: ./${{ matrix.package-name }}
# run: |
# yapf -r --diff .
# - name: Test with pytest
# working-directory: ./${{ matrix.package-name }}
# run: |
# pytest
8 changes: 8 additions & 0 deletions README.md
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Welcome to the GEOS Python Package Repository!
-----------------------------------------------

This repository contains a set of python packages that are used alongside [GEOS](https://github.com/GEOS-DEV/GEOS).
They can be installed automatically by running "make geosx_python_tools" in the GEOS build directory, or can be installed manually with pip.
See the [documentation](https://geosx-geosx.readthedocs-hosted.com/projects/geosx-geospythonpackages/en/latest/) for additional details about the packages and how to use them.

4 changes: 2 additions & 2 deletions timehistory_package/setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -8,9 +8,9 @@ license = LGPL-2.1

[options]
packages =
plot_time_history
timehistory
install_requires =
matplotlib
hdf5_wrapper
h5py
numpy
python_requires = >=3.6