-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Setup the geos python package CI #4
Merged
Merged
Changes from all commits
Commits
Show all changes
7 commits
Select commit
Hold shift + click to select a range
a75d9e9
Adding an initial workflow file
cssherman 4158922
Fixing workflow matrix
cssherman e73eaab
Fixing workflow variables
cssherman 53a1bcd
Removing extra cd command in workflows
cssherman c6888c5
Setting up mpi4py in the CI, fixing timehistory config
cssherman d9ae5ba
Modifying the timehistory prerequisites list
cssherman 2c9da4b
Adding python 3.8 to CI test matrix
cssherman File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,40 @@ | ||
name: geosPythonPackages CI | ||
on: pull_request | ||
|
||
# Cancels in-progress workflows for a PR when updated | ||
concurrency: | ||
group: ${{ github.workflow }}-${{ github.ref }} | ||
cancel-in-progress: true | ||
|
||
|
||
jobs: | ||
build: | ||
|
||
runs-on: ubuntu-22.04 | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
python-version: ["3.8", "3.9", "3.10", "3.11"] | ||
package-name: ["geos_ats_package", "geosx_mesh_doctor", "geosx_mesh_tools_package", "geosx_xml_tools_package", "hdf5_wrapper_package", "pygeosx_tools_package", "timehistory_package"] | ||
|
||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: mpi4py/setup-mpi@v1 | ||
- name: Set up Python ${{ matrix.python-version }} | ||
uses: actions/setup-python@v3 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
- name: Install package | ||
working-directory: ./${{ matrix.package-name }} | ||
run: | | ||
python -m pip install --upgrade pip | ||
python -m pip install pytest yapf toml | ||
python -m pip install . | ||
# - name: Lint with yapf | ||
# working-directory: ./${{ matrix.package-name }} | ||
# run: | | ||
# yapf -r --diff . | ||
# - name: Test with pytest | ||
# working-directory: ./${{ matrix.package-name }} | ||
# run: | | ||
# pytest |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,8 @@ | ||
|
||
Welcome to the GEOS Python Package Repository! | ||
----------------------------------------------- | ||
|
||
This repository contains a set of python packages that are used alongside [GEOS](https://github.com/GEOS-DEV/GEOS). | ||
They can be installed automatically by running "make geosx_python_tools" in the GEOS build directory, or can be installed manually with pip. | ||
See the [documentation](https://geosx-geosx.readthedocs-hosted.com/projects/geosx-geospythonpackages/en/latest/) for additional details about the packages and how to use them. | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Do we want to rely on this or should we prefer installing from
requirements.txt
?There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
These help to setup the underlying python and mpi environments (needed for mpi4py to not throw an error). We could probably roll our own, but these actions seem to be quite reliable.