done

GMOD · Aug 21, 2023 · 3f3ffd0 · 3f3ffd0
1 parent af6469c
commit 3f3ffd0
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Showing 2 changed files with 32 additions and 27 deletions.
diff --git a/packages/apollo-collaboration-server/.development.env b/packages/apollo-collaboration-server/.development.env
@@ -6,7 +6,7 @@
 URL=http://localhost
 
 # MongoDB connection
-MONGODB_URI=mongodb://localhost:27017/apolloDb
+MONGODB_URI=mongodb://127.0.0.1:27017/apolloDb
 # Alternatively, can be a path to a file with the URI
 # MONGODB_URI_FILE=/run/secrets/mongodb-uri
 

diff --git a/packages/jbrowse-plugin-apollo/src/components/AddFeature.tsx b/packages/jbrowse-plugin-apollo/src/components/AddFeature.tsx
@@ -37,30 +37,6 @@ enum PhaseEnum {
   two = 2,
 }
 
-async function fetchValidDescendantTerms(
-  parentFeature: AnnotationFeatureI | undefined,
-  ontologyStore: OntologyStore,
-  _signal: AbortSignal,
-) {
-  if (parentFeature) {
-    // since this is a child of an existing feature, restrict the autocomplete choices to valid
-    // parts of that feature
-    const parentTypeTerms = (
-      await ontologyStore.getTermsWithLabelOrSynonym(parentFeature.type, {
-        includeSubclasses: false,
-      })
-    ).filter(isOntologyClass)
-    if (parentTypeTerms.length) {
-      const subpartTerms = await ontologyStore.getClassesThat(
-        'part_of',
-        parentTypeTerms,
-      )
-      return subpartTerms
-    }
-  }
-  return undefined
-}
-
 export function AddFeature({
   session,
   handleClose,
@@ -75,8 +51,37 @@ export function AddFeature({
   const [phase, setPhase] = useState('')
   const [phaseAsNumber, setPhaseAsNumber] = useState<PhaseEnum>()
   const [showPhase, setShowPhase] = useState<boolean>(false)
-
   const [errorMessage, setErrorMessage] = useState('')
+  const [tmpText, setTmpText] = useState('')
+
+  async function fetchValidDescendantTerms(
+    parentFeature: AnnotationFeatureI | undefined,
+    ontologyStore: OntologyStore,
+    _signal: AbortSignal,
+  ) {
+    if (parentFeature) {
+      // since this is a child of an existing feature, restrict the autocomplete choices to valid
+      // parts of that feature
+      const parentTypeTerms = (
+        await ontologyStore.getTermsWithLabelOrSynonym(parentFeature.type, {
+          includeSubclasses: false,
+        })
+      ).filter(isOntologyClass)
+      if (parentTypeTerms.length) {
+        const subpartTerms = await ontologyStore.getClassesThat(
+          'part_of',
+          parentTypeTerms,
+        )
+        if (subpartTerms.length > 0) {
+          setTmpText('')
+        } else {
+          setTmpText(`No possible child type for "${parentFeature.type}"`)
+        }
+        return subpartTerms
+      }
+    }
+    return undefined
+  }
 
   async function onSubmit(event: React.FormEvent<HTMLFormElement>) {
     event.preventDefault()
@@ -192,6 +197,7 @@ export function AddFeature({
               }
             }}
           />
+          <div style={{ backgroundColor: 'yellow' }}>{tmpText}</div>
           {showPhase ? (
             <FormControl>
               <InputLabel>Phase</InputLabel>
@@ -203,7 +209,6 @@ export function AddFeature({
             </FormControl>
           ) : null}
         </DialogContent>
-
         <DialogActions>
           <Button
             variant="contained"