Skip to content

Commit

Permalink
cleaning
Browse files Browse the repository at this point in the history
  • Loading branch information
Maya Brandi committed Nov 26, 2014
1 parent 4a78ec1 commit 3f53997
Showing 1 changed file with 0 additions and 72 deletions.
72 changes: 0 additions & 72 deletions __init__.py
Original file line number Diff line number Diff line change
@@ -1,72 +0,0 @@
INITALQCFINISHEDLIB = {'24' : 'Customer Gel QC',
'62' : 'qPCR QC (Library Validation) 4.0',
'64' : 'Quant-iT QC (Library Validation) 4.0',
'67' : 'Qubit QC (Library Validation) 4.0',
'20' : 'CaliperGX QC (DNA)',
'17' : 'Bioanalyzer QC (Library Validation) 4.0'}
INITALQC ={'63' : 'Quant-iT QC (DNA) 4.0',
'65' : 'Quant-iT QC (RNA) 4.0',
'66' : 'Qubit QC (DNA) 4.0',
'68' : 'Qubit QC (RNA) 4.0',
'24' : 'Customer Gel QC',
'20' : 'CaliperGX QC (DNA)',
'16' : 'Bioanalyzer QC (DNA) 4.0',
'18' : 'Bioanalyzer QC (RNA) 4.0',
'116' : 'CaliperGX QC (RNA)',
'504' : 'Volume Measurement QC'}
AGRINITQC = {'7' : 'Aggregate QC (DNA) 4.0',
'9' : 'Aggregate QC (RNA) 4.0'}
PREPREPSTART = {'74': 'Shear DNA (SS XT) 4.0',
'304' : "Ligate 3' adapters (TruSeq small RNA) 1.0"}
POOLING = {'42': "Library Pooling (Illumina SBS) 4.0",
'43': "Library Pooling (MiSeq) 4.0",
'44': "Library Pooling (TruSeq Amplicon) 4.0",
'45': "Library Pooling (TruSeq Exome) 4.0",
'58': "Pooling For Multiplexed Sequencing (SS XT) 4.0",
'255': "Library Pooling (Finished Libraries) 4.0",
'308': "Library Pooling (TruSeq Small RNA) 1.0",
'404': "Pre-Pooling (Illumina SBS) 4.0",
'506': "Pre-Pooling (MiSeq) 4.0",
'508': "Applications Pre-Pooling"}
PREPSTART = {'10' : 'Aliquot Libraries for Hybridization (SS XT)',
'47' : 'mRNA Purification, Fragmentation & cDNA synthesis (TruSeq RNA) 4.0',
'33' : 'Fragment DNA (TruSeq DNA) 4.0',
'407' : 'Fragment DNA (ThruPlex)',
'308': 'Library Pooling (TruSeq Small RNA) 1.0',
'117' : 'Applications Generic Process',
'405' : 'RiboZero depletion'}
PREPEND = {'157': 'Applications Finish Prep',
'109' : 'CA Purification',
'456' : 'Purification (ThruPlex)',
'111' : 'Amplify Captured Libraries to Add Index Tags (SS XT) 4.0',
'406' : 'End repair, size selection, A-tailing and adapter ligation (TruSeq PCR-free DNA) 4.0',
'311': 'Sample Placement (Size Selection)'}
LIBVAL = {'62' : 'qPCR QC (Library Validation) 4.0',
'64' : 'Quant-iT QC (Library Validation) 4.0',
'67' : 'Qubit QC (Library Validation) 4.0',
'20' : 'CaliperGX QC (DNA)',
'17' : 'Bioanalyzer QC (Library Validation) 4.0'}
LIBVALFINISHEDLIB = {'62' : 'qPCR QC (Library Validation) 4.0',
'64' : 'Quant-iT QC (Library Validation) 4.0',
'67' : 'Qubit QC (Library Validation) 4.0',
'20' : 'CaliperGX QC (DNA)',
'17' : 'Bioanalyzer QC (Library Validation) 4.0',
'24' : 'Customer Gel QC'}
AGRLIBVAL = {'8': 'Aggregate QC (Library Validation) 4.0'}
SEQSTART = {'23':'Cluster Generation (Illumina SBS) 4.0',
'26':'Denature, Dilute and Load Sample (MiSeq) 4.0'}

DILSTART = {'40' : 'Library Normalization (MiSeq) 4.0',
'39' : 'Library Normalization (Illumina SBS) 4.0'}
SEQUENCING = {'38' : 'Illumina Sequencing (Illumina SBS) 4.0',
'46' : 'MiSeq Run (MiSeq) 4.0'}
WORKSET = {'204' : 'Setup Workset/Plate'}
SUMMARY = {'356' : 'Project Summary 1.3'}
DEMULTIPLEX={'13' : 'Bcl Conversion & Demultiplexing (Illumina SBS) 4.0'}

FINLIB = ['Finished library', 'Amplicon']
PROJ_UDF_EXCEPTIONS = ['customer_reference','uppnex_id','reference_genome','application']
SAMP_UDF_EXCEPTIONS = ['customer_name','reads_requested_(millions)','min_reads',
'm_reads','dup_rm','status_auto','status_manual','average_size_bp','incoming_qc_status']

CALIPER={'20' : 'CaliperGX QC (DNA)','116' : 'CaliperGX QC (RNA)'}

0 comments on commit 3f53997

Please sign in to comment.