Merge pull request #39 from Galithil/master

add close date to projects from worksets
Galithil · Jul 27, 2016 · abcbfe3 · abcbfe3
2 parents 6af2d41 + 65c3f42
commit abcbfe3
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 0 deletions.
diff --git a/LIMS2DB/classes.py b/LIMS2DB/classes.py
@@ -238,6 +238,8 @@ def build(self):
                                                     'name' : project.name, 
                                                     'library' : project.udf_dict.get('Library construction method'), 
                                                     'samples' : {}}
+                if project.closedate:
+                    self.obj['projects'][project.luid]['close_date']=project.closedate.strftime("%Y-%m-%d")
             if sample.name not in self.obj['projects'][project.luid]['samples']:
                 self.obj['projects'][project.luid]['samples'][sample.name]={'customer_name' : sample.udf_dict.get('Customer Name'), 
                                                                             'sequencing_status' : 'UNKNOWN', 'library_status' : 'UNKNOWN', 

diff --git a/LIMS2DB/flowcell_sql.py b/LIMS2DB/flowcell_sql.py
@@ -31,6 +31,8 @@ def create_lims_data_obj(session, pro):
     for art in arts:
         #lane is a string
         lane=art.containerplacement.api_string.split(":")[0]
+        if lane.isalpha():
+            lane=str(ord(lane)-64)
         obj['run_summary'][lane]=art.udf_dict
         obj['run_summary'][lane]['qc']=art.qc_flag