read the docs

__init__.py

@@ -0,0 +1,72 @@
+INITALQCFINISHEDLIB = {'24' : 'Customer Gel QC',
+    '62' : 'qPCR QC (Library Validation) 4.0',
+    '64' : 'Quant-iT QC (Library Validation) 4.0',
+    '67' : 'Qubit QC (Library Validation) 4.0',
+    '20' : 'CaliperGX QC (DNA)',
+    '17' : 'Bioanalyzer QC (Library Validation) 4.0'}
+INITALQC ={'63' : 'Quant-iT QC (DNA) 4.0',
+    '65' : 'Quant-iT QC (RNA) 4.0',
+    '66' : 'Qubit QC (DNA) 4.0',
+    '68' : 'Qubit QC (RNA) 4.0',
+    '24' : 'Customer Gel QC',
+    '20' : 'CaliperGX QC (DNA)',
+    '16' : 'Bioanalyzer QC (DNA) 4.0',
+    '18' : 'Bioanalyzer QC (RNA) 4.0',
+    '116' : 'CaliperGX QC (RNA)',
+    '504' : 'Volume Measurement QC'}
+AGRINITQC = {'7' : 'Aggregate QC (DNA) 4.0',
+    '9' : 'Aggregate QC (RNA) 4.0'}
+PREPREPSTART = {'74': 'Shear DNA (SS XT) 4.0',
+    '304' : "Ligate 3' adapters (TruSeq small RNA) 1.0"}
+POOLING = {'42': "Library Pooling (Illumina SBS) 4.0",
+    '43': "Library Pooling (MiSeq) 4.0",
+    '44': "Library Pooling (TruSeq Amplicon) 4.0",
+    '45': "Library Pooling (TruSeq Exome) 4.0",
+    '58': "Pooling For Multiplexed Sequencing (SS XT) 4.0",
+    '255': "Library Pooling (Finished Libraries) 4.0",
+    '308': "Library Pooling (TruSeq Small RNA) 1.0",
+    '404': "Pre-Pooling (Illumina SBS) 4.0",
+    '506': "Pre-Pooling (MiSeq) 4.0",
+    '508': "Applications Pre-Pooling"}
+PREPSTART = {'10' : 'Aliquot Libraries for Hybridization (SS XT)',
+    '47' : 'mRNA Purification, Fragmentation & cDNA synthesis (TruSeq RNA) 4.0',
+    '33' : 'Fragment DNA (TruSeq DNA) 4.0',
+    '407' : 'Fragment DNA (ThruPlex)',
+    '308': 'Library Pooling (TruSeq Small RNA) 1.0',
+    '117' : 'Applications Generic Process',
+    '405' : 'RiboZero depletion'}
+PREPEND = {'157': 'Applications Finish Prep',
+    '109' : 'CA Purification',
+    '456' : 'Purification (ThruPlex)',
+    '111' : 'Amplify Captured Libraries to Add Index Tags (SS XT) 4.0',
+    '406' : 'End repair, size selection, A-tailing and adapter ligation (TruSeq PCR-free DNA) 4.0',
+    '311': 'Sample Placement (Size Selection)'}
+LIBVAL = {'62' : 'qPCR QC (Library Validation) 4.0',
+    '64' : 'Quant-iT QC (Library Validation) 4.0',
+    '67' : 'Qubit QC (Library Validation) 4.0',
+    '20' : 'CaliperGX QC (DNA)',
+    '17' : 'Bioanalyzer QC (Library Validation) 4.0'}
+LIBVALFINISHEDLIB = {'62' : 'qPCR QC (Library Validation) 4.0',
+    '64' : 'Quant-iT QC (Library Validation) 4.0',
+    '67' : 'Qubit QC (Library Validation) 4.0',
+    '20' : 'CaliperGX QC (DNA)',
+    '17' : 'Bioanalyzer QC (Library Validation) 4.0',
+    '24' : 'Customer Gel QC'}
+AGRLIBVAL = {'8': 'Aggregate QC (Library Validation) 4.0'}
+SEQSTART = {'23':'Cluster Generation (Illumina SBS) 4.0',
+    '26':'Denature, Dilute and Load Sample (MiSeq) 4.0'}
+
+DILSTART = {'40' : 'Library Normalization (MiSeq) 4.0',
+    '39' : 'Library Normalization (Illumina SBS) 4.0'}
+SEQUENCING = {'38' : 'Illumina Sequencing (Illumina SBS) 4.0',
+    '46' : 'MiSeq Run (MiSeq) 4.0'}
+WORKSET = {'204' : 'Setup Workset/Plate'}
+SUMMARY = {'356' : 'Project Summary 1.3'}
+DEMULTIPLEX={'13' : 'Bcl Conversion & Demultiplexing (Illumina SBS) 4.0'}
+
+FINLIB = ['Finished library', 'Amplicon']
+PROJ_UDF_EXCEPTIONS = ['customer_reference','uppnex_id','reference_genome','application']
+SAMP_UDF_EXCEPTIONS = ['customer_name','reads_requested_(millions)','min_reads',
+    'm_reads','dup_rm','status_auto','status_manual','average_size_bp','incoming_qc_status']
+
+CALIPER={'20' : 'CaliperGX QC (DNA)','116' : 'CaliperGX QC (RNA)'}

docs/index.rst

@@ -19,11 +19,6 @@ Process Categories
    :undoc-members:
 
 
-.. autofunction:: process_categories
-   :members:
-   :private-members:
-   :undoc-members:
-
 Indices and tables
 ==================