Code

Optimization modules#71

Code

Merged

iraikov merged 46 commits intomainGazzolaLab/MiV-Simulator:mainfrom feature/optimizationGazzolaLab/MiV-Simulator:feature/optimizationCopy head branch name to clipboardApr 13, 2024

+1,752-510

Commits

Commits on Nov 1, 2023

• initial import of optimization modules

  iraikov

  committed
  1980fa2

  Copy full SHA for 1980fa2

Commits on Nov 3, 2023

• update to poetry lock file

  iraikov

  committed
  f5827e2

  Copy full SHA for f5827e2

• factoring out click interface for optimize_network

  iraikov

  committed
  09f9f0e

  Copy full SHA for 09f9f0e

Commits on Nov 7, 2023

• added missing imports from optimization in network clamp

  iraikov

  committed
  a4446f2

  Copy full SHA for a4446f2

• formatting fix

  iraikov

  committed
  8ff512a

  Copy full SHA for 8ff512a

Commits on Nov 15, 2023

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  4bdc036

  Copy full SHA for 4bdc036

Commits on Nov 16, 2023

• various bug fixes in infrastructure scripts

  iraikov

  committed
  4dbd831

  Copy full SHA for 4dbd831

• opto stim: make expProb parameter optional and set default value to 1

  iraikov

  committed
  27d9e74

  Copy full SHA for 27d9e74

Commits on Jan 23, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  b591580

  Copy full SHA for b591580

• Merge branch 'main' into feature/optimization

  iraikov

  committed
  30cd8fa

  Copy full SHA for 30cd8fa

• Merge branch 'feature/optimization' of https://github.com/GazzolaLab/MiV-Simulator into feature/optimization

  iraikov

  committed
  3656fbd

  Copy full SHA for 3656fbd

Commits on Mar 5, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  ff9380b

  Copy full SHA for ff9380b

Commits on Mar 6, 2024

• Fix always-true network shutdown

  frthjf

  committed
  d905d79

  Copy full SHA for d905d79

• Update poetry lock

  frthjf

  committed
  9051357

  Copy full SHA for 9051357

• Merge branch 'feature/optimization' of https://github.com/GazzolaLab/MiV-Simulator into feature/optimization

  iraikov

  committed
  de4c25d

  Copy full SHA for de4c25d

Commits on Mar 7, 2024

• multiple fixes to network clamp optimization and synapse parameter update logic

  iraikov

  committed
  92a81e5

  Copy full SHA for 92a81e5

• fixes related to optimize_network

  iraikov

  committed
  8a64e43

  Copy full SHA for 8a64e43

Commits on Mar 18, 2024

• Apply black formatting

  frthjf

  committed
  d35f8ea

  Copy full SHA for d35f8ea

Commits on Mar 19, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  a8172f9

  Copy full SHA for a8172f9

Commits on Mar 21, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  57ffa4a

  Copy full SHA for 57ffa4a

Commits on Mar 22, 2024

• Disable MPI for non-mpi interfaces

  frthjf

  committed
  2213729

  Copy full SHA for 2213729

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  b765f7a

  Copy full SHA for b765f7a

Commits on Mar 23, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  975d311

  Copy full SHA for 975d311

Commits on Mar 24, 2024

• added missing call to subworlds in network setup;

  Show description for 7c5f216
  iraikov

  committed
  7c5f216

  Copy full SHA for 7c5f216

• Merge branch 'feature/optimization' of https://github.com/GazzolaLab/MiV-Simulator into feature/optimization

  iraikov

  committed
  e65ed8e

  Copy full SHA for e65ed8e

• Apply codestyle

  frthjf

  committed
  5604aea

  Copy full SHA for 5604aea

Commits on Mar 25, 2024

• Remove target_trj_rate_map_dict residuals

  frthjf

  committed
  367825b

  Copy full SHA for 367825b

• Add Config.clamp attribute

  frthjf

  committed
  55252e7

  Copy full SHA for 55252e7

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  e1c63c9

  Copy full SHA for e1c63c9

• further fixes to support for reduced cell models

  iraikov

  committed
  6657a4f

  Copy full SHA for 6657a4f

Commits on Apr 3, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  dac9808

  Copy full SHA for dac9808

Commits on Apr 4, 2024

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  13b2798

  Copy full SHA for 13b2798

• Apply style

  frthjf

  committed
  cd75b8f

  Copy full SHA for cd75b8f

• bug fixes in check_synapses

  iraikov

  committed
  6c80245

  Copy full SHA for 6c80245

• Merge branch 'feature/optimization' of https://github.com/GazzolaLab/MiV-Simulator into feature/optimization

  iraikov

  committed
  fa8f87e

  Copy full SHA for fa8f87e

Commits on Apr 5, 2024

• bug fixes in reposition_trees

  iraikov

  committed
  8761f5c

  Copy full SHA for 8761f5c

• small refactor of measure_distances to avoid use of bcast_cell_attributes

  iraikov

  committed
  5b0c33d

  Copy full SHA for 5b0c33d

• generate_connections: use population dict from Env

  iraikov

  committed
  1fd8aaa

  Copy full SHA for 1fd8aaa

• bug fixes in generate_connections

  iraikov

  committed
  fb5f32a

  Copy full SHA for fb5f32a

Commits on Apr 6, 2024

• Rollback hardcoded types

  frthjf

  committed
  f2402b5

  Copy full SHA for f2402b5

• More type checker fixes

  frthjf

  committed
  6204bec

  Copy full SHA for 6204bec

• Ignore missing populations in make_h5types

  frthjf

  committed
  6aaa347

  Copy full SHA for 6aaa347

• Merge branch 'main' into feature/optimization

  frthjf

  committed
  2682ce0

  Copy full SHA for 2682ce0

Commits on Apr 9, 2024

• Raise more meaningful error for population defintion mismatch

  frthjf

  committed
  504c6a5

  Copy full SHA for 504c6a5

Commits on Apr 11, 2024

• connection generator: added chunk_size setting to append_graph calls

  iraikov

  committed
  5b87a38

  Copy full SHA for 5b87a38

• Merge branch 'feature/optimization' of https://github.com/GazzolaLab/MiV-Simulator into feature/optimization

  iraikov

  committed
  e690b39

  Copy full SHA for e690b39