v0.5.3

0.5.3 (2025-02-06)

Features

• add endpoint that returns the lineageDefinitions for the requested column (#689) (69cd9b0)

v0.5.2

0.5.2 (2025-01-29)

Features

• add the version to the output of the info endpoint (#680) (87e3f60), closes #604

v0.5.1

0.5.1 (2025-01-28)

Features

• update base image to ubuntu:24.04 (46d0567)

Bug Fixes

• return an error if reserved value INT32_MIN is used in filter (042646b)

v0.5.0

0.5.0 (2024-12-19)

⚠ BREAKING CHANGES

• new command line / config system

Features

• add materializationCutoff option (8920d5f)
• new command line / config system (2a29074), closes #633

Bug Fixes

• declare virtual constructor for abstract base class CustomSqlFunction (603ddf6)

v0.4.0

0.4.0 (2024-11-14)

⚠ BREAKING CHANGES

• metadataInputFile key in preprocessing config file has been removed. Instead, ndjson files should be used and specified with the ndjsonInputFilename option

Features

• remove tsv/fasta/sam input format (#562) (fd7dc6f)

Bug Fixes

• preprocessing: correct error message when field is in config but not in metadata file (828182a)
• remove shared_ptr in lambda captures which might lead to memory leaks (a26d8b8)

v0.3.2

0.3.2 (2024-10-30)

Bug Fixes

• preprocessing: add column_name to column classes and add them to error messages (e011e5c) (#629)

v0.3.1

0.3.1 (2024-10-25)

Bug Fixes

• preprocessing: error on duplicate primary keys (687c3ef)
• validate the column types earlier to prevent duckdb auto-casting to cast types with differing round-trip conversions (ac238b2)

v0.3.0

0.3.0 (2024-10-16)

⚠ BREAKING CHANGES

• generalized wildcard queries (#458)
  • The preprocessing config field pangoLineageDefinitionFilename has been renamed to lineageDefinitionFilename.
  • We now accept a YAML lineage definition file instead of a Pango alias key.
  • Input and query validation now checks whether the provided lineage exists in the defined lineages, and errors are thrown if validation fails.
  • The metadata type pangoLineage has been removed. type: string with generateLineageIndex: true should be used instead.

Features

• generalized wildcard queries (#458) (1432320)

Bug Fixes

• resolve aliases when inserting to or querying lineage indexes again (0e841e6)
• update script to also generate aliases (43ac4aa)

0.3.0 (2024-10-16)

v0.2.24

0.2.24 (2024-10-15)

Bug Fixes

• prevent setDatabase starvation which leads to no updates of currently loaded database (24e4db6)

v0.2.23

0.2.23 (2024-10-10)

Bug Fixes

• preprocessing: enforce exact match on file base stem when pairing sequence and metadata when processing from file (7c9b23d), closes #607