fix(lapis-docs): Sequence file naming scheme uses indexes now not names #958
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The expected names of sequence files changed in LAPIS-SILO 0.2.13 from using names (e.g. nuc_main.fasta) to using indexes (nuc_0.fasta). Related-to: <GenSpectrum/LAPIS-SILO#529>
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@tsibley is attempting to deploy a commit to the cov-spectrum Team on Vercel. A member of the Team first needs to authorize it. |
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Thank you for your contribution!
We know that the documentation is quite outdated, especially the parts regarding SILO. #376 contains a collection of issues we are aware of. (This issue was not on the list)
Also, we'd be glad to get feedback on the current docs. If something is not comprehensive enough or needs other improvements, just let us know.
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Hm, our CI is not really prepared for PRs from forks... I'm merging anyways as I'm quite confident that this doesn't break anything ;) |
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@fengelniederhammer Thanks for the pointer to #376. I've found the current docs to be decent. While they might be outdated in places, they've still done a good job for me of helping paint the big picture (in combination with reading code/tests). |
The expected names of sequence files changed in LAPIS-SILO 0.2.13 from using names (e.g. nuc_main.fasta) to using indexes (nuc_0.fasta).
Related-to: GenSpectrum/LAPIS-SILO#529