update with ECOOT each and VAE feature matching #8
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: "Sphinx: Render docs" | |
on: push | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v3 | |
with: | |
python-version: '3.x' | |
- name: Install Sphinx & Dependencies | |
run: | | |
pip install sphinx sphinx_rtd_theme | |
cd scvi-tools/; pip install . | |
cd ../ott/; pip install . | |
cd ../perturbot; pip install . | |
- name: Build Documentation | |
working-directory: perturbot | |
run: sphinx-build . _build | |
- uses: actions/upload-pages-artifact@v3 | |
with: | |
name: github-pages | |
path: perturbot/_build | |
deploy: | |
needs: build | |
if: github.ref == 'refs/heads/main' | |
permissions: | |
id-token: write | |
pages: write | |
environment: | |
name: github-pages | |
url: ${{ steps.deployment.outputs.page_url }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Deploy to GitHub Pages | |
id: deployment | |
uses: actions/deploy-pages@v4 |