Initial commit

.github/workflows/aggregated_report.yml

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+name: Aggregated Report
+
+on:
+  push:
+    branches: [ "main" ]
+
+jobs:
+  ort:
+    strategy:
+      fail-fast: false
+    runs-on: ubuntu-latest
+    steps:
+      - name: Use HTTPS instead of SSH for Git cloning
+        run: git config --global url.https://github.com/.insteadOf ssh://[email protected]/
+      - uses: actions/checkout@v3
+        with:
+          submodules: 'true'
+      - uses: oss-review-toolkit/ort-ci-github-action@b6d71a83acba8619f16b30c008f212a7a572f8e8 #v1
+        with:
+          report-formats: CycloneDx,SpdxDocument,WebApp,PlainTextTemplate,Opossum
+          run: 'cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results'

.github/workflows/report_per_repo.yml

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+name: Report per Repository
+
+on:
+  push:
+    branches: [ "main" ]
+
+jobs:
+  ort:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - repository: GenomicDataInfrastructure/starter-kit-storage-and-interfaces
+            sw-name: starter-kit-storage-and-interfaces
+          - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-gdi-userportal
+            sw-name: gdi-userportal-ckanext-gdi-userportal
+          - repository: GenomicDataInfrastructure/gdi-userportal-frontend
+            sw-name: gdi-userportal-frontend
+          - repository: GenomicDataInfrastructure/gdi-userportal-apigateway
+            sw-name: gdi-userportal-apigateway
+          - repository: GenomicDataInfrastructure/gdi-userportal-ckan-docker
+            sw-name: gdi-userportal-ckan-docker
+          - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-dcat
+            sw-name: gdi-userportal-ckanext-dcat
+          - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-harvest
+            sw-name: gdi-userportal-ckanext-harvest
+          - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-scheming
+            sw-name: gdi-userportal-ckanext-scheming
+          - repository: GenomicDataInfrastructure/gdi-userportal-docs
+            sw-name: gdi-userportal-docs
+          - repository: GenomicDataInfrastructure/starter-kit-beacon2-ri-api
+            sw-name: starter-kit-beacon2-ri-api
+          - repository: EGA-archive/beacon2-ri-api
+            sw-name: beacon2-ri-api
+          - repository: GenomicDataInfrastructure/starter-kit-rems
+            sw-name: starter-kit-rems
+          - repository: CSCfi/rems
+            sw-name: rems
+          - repository: GenomicDataInfrastructure/starter-kit-htsget
+            sw-name: starter-kit-htsget
+          - repository: GenomicDataInfrastructure/starter-kit-containerized-computation
+            sw-name: starter-kit-containerized-computation
+          - repository: GenomicDataInfrastructure/starter-kit-lsaai-mock
+            sw-name: starter-kit-lsaai-mock
+          - repository: GenomicDataInfrastructure/starter-kit-lsaai-mock
+            sw-name: starter-kit-lsaai-mock
+          - repository: GenomicDataInfrastructure/starter-kit-lsaai
+            sw-name: starter-kit-lsaai
+
+    runs-on: ubuntu-latest
+    steps:
+      - name: Use HTTPS instead of SSH for Git cloning
+        run: git config --global url.https://github.com/.insteadOf ssh://[email protected]/
+      - uses: actions/checkout@v3
+        with:
+          repository: ${{ matrix.repository }}
+      - uses: oss-review-toolkit/ort-ci-github-action@b6d71a83acba8619f16b30c008f212a7a572f8e8 #v1
+        with:
+          report-formats: CycloneDx,SpdxDocument,WebApp,PlainTextTemplate,Opossum
+          sw-name: ${{ matrix.sw-name }}
+          run: 'cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results'

.gitmodules

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+[submodule "repos/starter-kit-storage-and-interfaces"]
+	path = repos/starter-kit-storage-and-interfaces
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-storage-and-interfaces.git
+[submodule "repos/gdi-userportal-ckanext-gdi-userportal"]
+	path = repos/gdi-userportal-ckanext-gdi-userportal
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-ckanext-gdi-userportal.git
+[submodule "repos/gdi-userportal-frontend"]
+	path = repos/gdi-userportal-frontend
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-frontend.git
+[submodule "repos/gdi-userportal-apigateway"]
+	path = repos/gdi-userportal-apigateway
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-apigateway.git
+[submodule "repos/gdi-userportal-ckan-docker"]
+	path = repos/gdi-userportal-ckan-docker
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-ckan-docker.git
+	branch = user-portal-main
+[submodule "repos/gdi-userportal-ckanext-dcat"]
+	path = repos/gdi-userportal-ckanext-dcat
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-ckanext-dcat.git
+	branch = user-portal-v1.5.1
+[submodule "repos/gdi-userportal-ckanext-harvest"]
+	path = repos/gdi-userportal-ckanext-harvest
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-ckanext-harvest.git
+	branch = user-portal-v1.5.6
+[submodule "repos/gdi-userportal-ckanext-scheming"]
+	path = repos/gdi-userportal-ckanext-scheming
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-ckanext-scheming.git
+	branch = user-portal-v3.0.0
+[submodule "repos/gdi-userportal-docs"]
+	path = repos/gdi-userportal-docs
+	url = [email protected]:GenomicDataInfrastructure/gdi-userportal-docs.git
+[submodule "repos/beacon-v2"]
+	path = repos/beacon-v2
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-beacon2-ri-api.git
+[submodule "repos/beacon2-ri-api"]
+	path = repos/beacon2-ri-api
+	url = [email protected]:EGA-archive/beacon2-ri-api.git
+[submodule "repos/rems"]
+	path = repos/rems
+	url = [email protected]:CSCfi/rems.git
+[submodule "repos/starter-kit-rems.git"]
+	path = repos/starter-kit-rems.git
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-rems.git
+[submodule "repos/starter-kit-htsget"]
+	path = repos/starter-kit-htsget
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-htsget.git
+[submodule "repos/starter-kit-containerized-computation"]
+	path = repos/starter-kit-containerized-computation
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-containerized-computation.git
+[submodule "repos/starter-kit-lsaai-mock"]
+	path = repos/starter-kit-lsaai-mock
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-lsaai-mock.git
+[submodule "repos/starter-kit-lsaai"]
+	path = repos/starter-kit-lsaai
+	url = [email protected]:GenomicDataInfrastructure/starter-kit-lsaai.git

README.md

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+# gdi-userportal-ort
+OSS Review Toolkit for GDI User Portal.