Monthly SOP Review Check #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow executes a comparison script on all SOP documents and decides | |
| # whether the documents are due for review or not based on their last edit date | |
| # and a given day(s) threshold. | |
| # The workflow triggers itself every month, checking if new SOP documents are due for | |
| # review. | |
| # | |
| # For more information, check: | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/tree/main/scripts/check_sop_reviews.py | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/main/docs/GDI-SOP_information-service-management.md | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/main/docs/GDI-SOP_charter.md | |
| name: Monthly SOP Review Check | |
| on: | |
| schedule: | |
| - cron: '0 0 1 * *' # This runs at midnight on the 1st of every month | |
| workflow_dispatch: # Allows for manual triggering of the workflow | |
| jobs: | |
| check-sop-reviews: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/main' # Ensures the workflow only runs on the main branch | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| requirements_f="./requirements.txt" | |
| if [ -f "$requirements_f" ]; then pip install -r "$requirements_f" --verbose; fi | |
| - name: Run SOP Review Check | |
| run: | | |
| # To vary the day(s) threshold, modify "-dr". 365 --> One full year since last edit | |
| python3 scripts/check_sop_reviews.py sops/ -dr 365 -v 1 -r 'GenomicDataInfrastructure/standard-operating-procedures' -ct | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Uses GitHub's automatic token for auth |