Monthly SOP Review Check #3
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| # This workflow executes a comparison script on all SOP documents and decides | |
| # whether the documents are due for review or not based on their last edit date | |
| # and a given day(s) threshold. | |
| # The workflow triggers itself every month, checking if new SOP documents are due for | |
| # review. | |
| # | |
| # For more information, check: | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/tree/main/scripts/check_sop_reviews.py | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/main/docs/GDI-SOP_information-service-management.md | |
| # https://github.com/GenomicDataInfrastructure/standard-operating-procedures/blob/main/docs/GDI-SOP_charter.md | |
| name: Monthly SOP Review Check | |
| on: | |
| schedule: | |
| - cron: '0 0 1 * *' # This runs at midnight on the 1st of every month | |
| workflow_dispatch: # Allows for manual triggering of the workflow | |
| jobs: | |
| check-sop-reviews: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/main' # Ensures the workflow only runs on the main branch | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| requirements_f="./requirements.txt" | |
| if [ -f "$requirements_f" ]; then pip install -r "$requirements_f" --verbose; fi | |
| - name: Run SOP Review Check | |
| run: | | |
| # To vary the day(s) threshold, modify "-dr". 365 --> One full year since last edit | |
| python3 scripts/check_sop_reviews.py sops/ -dr 365 -v 1 -r 'GenomicDataInfrastructure/standard-operating-procedures' -ct | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Uses GitHub's automatic token for auth |