Version 1.3.1

Bug fixes

I changed the dispersal functions and classes so that they rely on fossil::earth.dist for distance calculations instead of geosphere::distm. This change resolves some bugs in tests that cropped up on M1Mac systems.

Version 1.3.0

Many changes have occurred since the last release (v1.0.5).

Enhancements

• Changed two of the vignettes to HTML vignettes.
• These vignettes should now run much faster on CRAN servers.
• Added a CONTRIBUTING.md file.
• Added examples for all functions, classes, and data objects in the package.
• Added a logo to the README.
• poems is now documented compliant with srr standards G1.0 through G1.6.
• Added density dependent dispersal, via density dependence in the source population and the target population
• Added Poisson distributions as a possible parameter distribution to the Latin hypercube sampler
• Test coverage has been increased for LatinHypercubeSampler.R, SimulationManager.R, and PopulationModel.R.
• A CITATION file has been added.
• A [https://globalecologylab.github.io/poems/](pkgdown documentation site) has been added.
• Code style has been improved across all R files and documentation.
• The dataset documentation has been updated to keep up with the latest roxygen2 style.
• Imports from the gdistance package are now more explicit.

Bug fixes

• The CRS of the tasmania_modifier raster dataset in /data has been changed from NA to the appropriate equal area projection.
• The vignettes now handle the objects in /data appropriately.
• Adjusted some tests so they will work correctly on certain Apple Silicon systems
• Patched some errors and notes that came up in the tests for the generator object and the spatial correlation object

Version 1.0.5

Stuart Brown's changes, especially translocation functions

Version 1.0.4

1.0.4 Email update on CRAN

• Skipped 1.0.3 in CRAN submission attempts
• Prevented some examples from running on check as they were taking too long on the CRAN win-builder checking servers. These servers are likely slower (or under more demand) than they were when the package was first accepted on CRAN. Consider reenabling the example checks if this situation changes in the future.

Version 1.0.2

CRAN update

• raster CRS updated to avoid future PROJ 8 errors

Version 1.0.1

CRAN release

Version 0.5.0

Version 0.5.0

• removed paleopop components

Version 0.4.4

Version 0.4.4

• Distribution generation (explicit) window sample functionality
• Results manager performance fix (slow writing to matrix list within R6 object)

Version 0.4.3

Version 0.4.3

• Updated thylacine vignette with extirpation CI and tuned ABC validation
• Generator distribution normalize threshold from attribute (string)

Version 0.4.2

Version 0.4.2
Enhancements and fixes:

• Change data frames also reduced via base decimal rounding in dispersal generator
• Very large N/K => transition = 0 when environmental stochasticity in paleopop simulator
• Temporal brick only when ncol matches in paleo-region