NaN -> nan for numpy 2 #865
Workflow file for this run
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| name: carrot-cdm | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-major-version: [3] | |
| python-minor-version: [8, 9, 10, 11] | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ format('{0}.{1}', matrix.python-major-version, matrix.python-minor-version) }} | |
| - uses: actions/checkout@v2 | |
| - run: ls . | |
| - name: Install setuptools | |
| run: pip3 install setuptools | |
| - name: Install carrot-tools | |
| run: pip3 install -e . | |
| - run: carrot --help | |
| unit_test_py_config: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-major-version: [3] | |
| python-minor-version: [8, 9, 10, 11] | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| needs: build | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ format('{0}.{1}', matrix.python-major-version, matrix.python-minor-version) }} | |
| - uses: actions/checkout@v2 | |
| - run: ls . | |
| - name: Install setuptools | |
| run: pip3 install setuptools | |
| - name: Install carrot-tools | |
| run: pip3 install -e . | |
| - run: carrot display rules json carrot/data/example/sample_config/lion_structural_mapping.json | |
| - run: carrot run py make --name Lion --register carrot/data/example/sample_config/lion_structural_mapping.json | |
| - run: carrot run py list | |
| - run: carrot run py map --conf Lion.py carrot/data/example/sample_input_data/*.csv | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: outputs | |
| path: output_data | |
| retention-days: 1 | |
| unit_test_json_config_unix: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-major-version: [3] | |
| python-minor-version: [8, 9, 10, 11] | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| needs: build | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ format('{0}.{1}', matrix.python-major-version, matrix.python-minor-version) }} | |
| - uses: actions/checkout@v2 | |
| - run: ls . | |
| - name: Install setuptools | |
| run: pip3 install setuptools | |
| - name: Install carrot-tools | |
| run: pip3 install -e . | |
| - run: | | |
| CARROT_DATA_FOLDER=$(carrot info data_folder) | |
| carrot run map --rules $CARROT_DATA_FOLDER/test/rules/rules_14June2021.json --output-folder tests/ $CARROT_DATA_FOLDER/test/inputs/*.csv -nc 100 | |
| rm -rf tests/ | |
| carrot run map --rules $CARROT_DATA_FOLDER/test/rules/rules_14June2021.json --output-folder tests/ $CARROT_DATA_FOLDER/test/inputs/*.csv | |
| - run: | | |
| for filename in tests/*.tsv; do | |
| fname=${filename##*/} | |
| carrot display diff $filename carrot/data/test/expected_outputs/$fname | |
| done | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: test | |
| path: tests | |
| retention-days: 1 | |
| unit_test_json_config_windows: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| python-major-version: [3] | |
| python-minor-version: [8, 9, 10, 11] | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| needs: build | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ format('{0}.{1}', matrix.python-major-version, matrix.python-minor-version) }} | |
| - uses: actions/checkout@v2 | |
| - run: ls . | |
| - name: Install setuptools | |
| run: pip3 install setuptools | |
| - name: Install carrot-tools | |
| run: pip3 install -e . | |
| - run: | | |
| carrot run map --rules carrot\data\test\rules\rules_14June2021.json --output-folder tests carrot\data\test\inputs | |
| - run: | | |
| $files = Get-ChildItem tests\*.tsv | |
| Foreach ($file in $files ) | |
| { | |
| $newFile = $file.FullName | |
| $refFile = $('carrot\data\test\expected_outputs\' + $file.Name) | |
| $command = $('carrot display diff ' + $newFile + ' ' + $refFile) | |
| Invoke-expression $command | |
| } | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: test | |
| path: tests | |
| retention-days: 1 | |
| pypi: | |
| if: startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - run: pip3 install wheel | |
| - uses: actions/checkout@v2 | |
| - run: | | |
| echo "__version__ = '${GITHUB_REF#refs/*/}'" > carrot/_version.py | |
| cat carrot/_version.py | |
| python3 setup.py sdist bdist_wheel | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_KEY }} | |
| unit_test_automation: | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: actions/checkout@v2 | |
| - name: Install setuptools | |
| run: pip3 install setuptools | |
| - name: Install carrot-tools | |
| run: pip3 install -e . | |
| - name: Run automation ETL | |
| run: | | |
| cd carrot/data/test | |
| carrot etl --config automation/example.yml |