Update comments about the GWAS and sample cohorts

HDRUK · Nov 1, 2024 · c123da5 · c123da5
1 parent f4474c8
commit c123da5
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/curation/template_parser.py b/curation/template_parser.py
@@ -319,8 +319,8 @@ def get_gwas_study(self,gcst_id:str,spreadsheet_cohorts:list,spreadsheet_name:st
 
             try:
                 source_PMID = response_data['publicationInfo']['pubmedId']
-                # Create list of cohorts if it exists in the GWAS study
-                # This override the Cohorts found in the cohort column in the spreadsheet
+                # Update the Cohorts list found in the cohort column of the spreadsheet by
+                # adding the list of cohorts from the GWAS study (if the list is present)
                 cohorts_list = spreadsheet_cohorts
                 if 'cohort' in response_data.keys():
                     cohorts = response_data['cohort'].split('|')

diff --git a/release/scripts/UpdateGwasStudies.py b/release/scripts/UpdateGwasStudies.py
@@ -125,7 +125,7 @@ def update_studies(self):
                 # Cohorts data
                 if cohorts_list or sample.cohorts:
                     # Use the list of cohorts from the GWAS study (if available)
-                    # Override the list of cohorts found in the existing sample
+                    # Update the list of cohorts from the existing sample if new cohorts are found in the GWAS study
                     if cohorts_list:
                         new_sample.cohorts.set(cohorts_list)
                         # Print a message if the 2 list of cohorts (old & new) are different