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Merge pull request #54 from HDRUK/GAT-4754
Schema updates to HDRv3 and GWDMv2
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,28 @@ | ||
| from pydantic import BaseModel | ||
| from enum import Enum | ||
|
|
||
| class AgeEnum(Enum): | ||
| DAYS_0_6 = '0-6 days' | ||
| DAYS_7_27 = '7-27 days' | ||
| MONTHS_1_11 = '1-11 months' | ||
| YEARS_1_4 = '1-4 years' | ||
| YEARS_5_9 = '5-9 years' | ||
| YEARS_10_14 = '10-14 years' | ||
| YEARS_15_19 = '15-19 years' | ||
| YEARS_20_14 = '20-14 years' | ||
| YEARS_25_29 = '25-29 years' | ||
| YEARS_30_34 = '30-34 years' | ||
| YEARS_35_39 = '35-39 years' | ||
| YEARS_40_44 = '40-44 years' | ||
| YEARS_45_49 = '45-49 years' | ||
| YEARS_50_54 = '50-54 years' | ||
| YEARS_55_59 = '55-59 years' | ||
| YEARS_60_64 = '60-64 years' | ||
| YEARS_65_69 = '65-69 years' | ||
| YEARS_70_74 = '70-74 years' | ||
| YEARS_75_79 = '75-79 years' | ||
| YEARS_80_84 = '80-84 years' | ||
| YEARS_85_89 = '85-89 years' | ||
| YEARS_90_94 = '90-94 years' | ||
| YEARS_65_99 = '65-99 years' | ||
| YEARS_100_PLUS = '100+ years' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| from enum import Enum | ||
|
|
||
| class Assay(Enum): | ||
| NMR_SPECTROSCOPY = 'NMR spectroscopy' | ||
| MASS_SPECTROMETRY = 'mass-spectrometry' | ||
| WHOLE_GENOME_SEQUENCING = 'whole genome sequencing' | ||
| EXOME_SEQUENCING = 'exome sequencing' | ||
| GENOTYPING_BY_ARRAY = 'genotyping by array' | ||
| TRANSCRIPTOME_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING = 'transcriptome profiling by high-throughput sequencing' | ||
| TRANSCRIPTOME_PROFILING_BY_ARRAY = 'transcriptome profiling by array' | ||
| AMPLICON_SEQUENCING = 'amplicon sequencing' | ||
| METHYLATION_BINDING_DOMAIN_SEQUENCING = 'methylation binding domain sequencing' | ||
| METHYLATION_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING = 'methylation profiling by high-throughput sequencing' | ||
| GENOMIC_VARIANT_CALLING = 'genomic variant calling' | ||
| CHROMATIN_ACCESSIBILITY_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING = 'chromatin accessibility profiling by high-throughput sequencing' | ||
| HISTONE_MODIFICATION_PROFILING_BY_HIGH_THROUGHPUT_SEQUENCING = 'histone modification profiling by high-throughput sequencing' | ||
| CHROMATIN_IMMUNOPRECIPITATION_SEQUENCING = 'chromatin immunoprecipitation sequencing' | ||
| WHOLE_GENOME_SHOTGUN_SEQUENCING = 'whole genome shotgun sequencing' | ||
| WHOLE_TRANSCRIPTOME_SEQUENCING = 'whole transcriptome sequencing' | ||
| TARGETED_MUTATION_ANALYSIS = 'targeted mutation analysis' | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,252 @@ | ||
| from enum import Enum | ||
|
|
||
| class CountryCodeEnum(Enum): | ||
| AF = 'AF' | ||
| AL = 'AL' | ||
| DZ = 'DZ' | ||
| AS = 'AS' | ||
| AD = 'AD' | ||
| AO = 'AO' | ||
| AI = 'AI' | ||
| AQ = 'AQ' | ||
| AG = 'AG' | ||
| AR = 'AR' | ||
| AM = 'AM' | ||
| AW = 'AW' | ||
| AU = 'AU' | ||
| AT = 'AT' | ||
| AZ = 'AZ' | ||
| BS = 'BS' | ||
| BH = 'BH' | ||
| BD = 'BD' | ||
| BB = 'BB' | ||
| BY = 'BY' | ||
| BE = 'BE' | ||
| BZ = 'BZ' | ||
| BJ = 'BJ' | ||
| BM = 'BM' | ||
| BT = 'BT' | ||
| BO = 'BO' | ||
| BQ = 'BQ' | ||
| BA = 'BA' | ||
| BW = 'BW' | ||
| BV = 'BV' | ||
| BR = 'BR' | ||
| IO = 'IO' | ||
| BN = 'BN' | ||
| BG = 'BG' | ||
| BF = 'BF' | ||
| BI = 'BI' | ||
| CV = 'CV' | ||
| KH = 'KH' | ||
| CM = 'CM' | ||
| CA = 'CA' | ||
| KY = 'KY' | ||
| CF = 'CF' | ||
| TD = 'TD' | ||
| CL = 'CL' | ||
| CN = 'CN' | ||
| CX = 'CX' | ||
| CC = 'CC' | ||
| CO = 'CO' | ||
| KM = 'KM' | ||
| CD = 'CD' | ||
| CG = 'CG' | ||
| CK = 'CK' | ||
| CR = 'CR' | ||
| HR = 'HR' | ||
| CU = 'CU' | ||
| CW = 'CW' | ||
| CY = 'CY' | ||
| CZ = 'CZ' | ||
| CI = 'CI' | ||
| DK = 'DK' | ||
| DJ = 'DJ' | ||
| DM = 'DM' | ||
| DO = 'DO' | ||
| EC = 'EC' | ||
| EG = 'EG' | ||
| SV = 'SV' | ||
| GQ = 'GQ' | ||
| ER = 'ER' | ||
| EE = 'EE' | ||
| SZ = 'SZ' | ||
| ET = 'ET' | ||
| FK = 'FK' | ||
| FO = 'FO' | ||
| FJ = 'FJ' | ||
| FI = 'FI' | ||
| FR = 'FR' | ||
| GF = 'GF' | ||
| PF = 'PF' | ||
| TF = 'TF' | ||
| GA = 'GA' | ||
| GM = 'GM' | ||
| GE = 'GE' | ||
| DE = 'DE' | ||
| GH = 'GH' | ||
| GI = 'GI' | ||
| GR = 'GR' | ||
| GL = 'GL' | ||
| GD = 'GD' | ||
| GP = 'GP' | ||
| GU = 'GU' | ||
| GT = 'GT' | ||
| GG = 'GG' | ||
| GN = 'GN' | ||
| GW = 'GW' | ||
| GY = 'GY' | ||
| HT = 'HT' | ||
| HM = 'HM' | ||
| VA = 'VA' | ||
| HN = 'HN' | ||
| HK = 'HK' | ||
| HU = 'HU' | ||
| IS = 'IS' | ||
| IN = 'IN' | ||
| ID = 'ID' | ||
| IR = 'IR' | ||
| IQ = 'IQ' | ||
| IE = 'IE' | ||
| IM = 'IM' | ||
| IL = 'IL' | ||
| IT = 'IT' | ||
| JM = 'JM' | ||
| JP = 'JP' | ||
| JE = 'JE' | ||
| JO = 'JO' | ||
| KZ = 'KZ' | ||
| KE = 'KE' | ||
| KI = 'KI' | ||
| KP = 'KP' | ||
| KR = 'KR' | ||
| KW = 'KW' | ||
| KG = 'KG' | ||
| LA = 'LA' | ||
| LV = 'LV' | ||
| LB = 'LB' | ||
| LS = 'LS' | ||
| LR = 'LR' | ||
| LY = 'LY' | ||
| LI = 'LI' | ||
| LT = 'LT' | ||
| LU = 'LU' | ||
| MO = 'MO' | ||
| MG = 'MG' | ||
| MW = 'MW' | ||
| MY = 'MY' | ||
| MV = 'MV' | ||
| ML = 'ML' | ||
| MT = 'MT' | ||
| MH = 'MH' | ||
| MQ = 'MQ' | ||
| MR = 'MR' | ||
| MU = 'MU' | ||
| YT = 'YT' | ||
| MX = 'MX' | ||
| FM = 'FM' | ||
| MD = 'MD' | ||
| MC = 'MC' | ||
| MN = 'MN' | ||
| ME = 'ME' | ||
| MS = 'MS' | ||
| MA = 'MA' | ||
| MZ = 'MZ' | ||
| MM = 'MM' | ||
| NA = 'NA' | ||
| NR = 'NR' | ||
| NP = 'NP' | ||
| NL = 'NL' | ||
| NC = 'NC' | ||
| NZ = 'NZ' | ||
| NI = 'NI' | ||
| NE = 'NE' | ||
| NG = 'NG' | ||
| NU = 'NU' | ||
| NF = 'NF' | ||
| MK = 'MK' | ||
| MP = 'MP' | ||
| NO = 'NO' | ||
| OM = 'OM' | ||
| PK = 'PK' | ||
| PW = 'PW' | ||
| PS = 'PS' | ||
| PA = 'PA' | ||
| PG = 'PG' | ||
| PY = 'PY' | ||
| PE = 'PE' | ||
| PH = 'PH' | ||
| PN = 'PN' | ||
| PL = 'PL' | ||
| PT = 'PT' | ||
| PR = 'PR' | ||
| QA = 'QA' | ||
| RO = 'RO' | ||
| RU = 'RU' | ||
| RW = 'RW' | ||
| RE = 'RE' | ||
| BL = 'BL' | ||
| SH = 'SH' | ||
| KN = 'KN' | ||
| LC = 'LC' | ||
| MF = 'MF' | ||
| PM = 'PM' | ||
| VC = 'VC' | ||
| WS = 'WS' | ||
| SM = 'SM' | ||
| ST = 'ST' | ||
| SA = 'SA' | ||
| SN = 'SN' | ||
| RS = 'RS' | ||
| SC = 'SC' | ||
| SL = 'SL' | ||
| SG = 'SG' | ||
| SX = 'SX' | ||
| SK = 'SK' | ||
| SI = 'SI' | ||
| SB = 'SB' | ||
| SO = 'SO' | ||
| ZA = 'ZA' | ||
| GS = 'GS' | ||
| SS = 'SS' | ||
| ES = 'ES' | ||
| LK = 'LK' | ||
| SD = 'SD' | ||
| SR = 'SR' | ||
| SJ = 'SJ' | ||
| SE = 'SE' | ||
| CH = 'CH' | ||
| SY = 'SY' | ||
| TW = 'TW' | ||
| TJ = 'TJ' | ||
| TZ = 'TZ' | ||
| TH = 'TH' | ||
| TL = 'TL' | ||
| TG = 'TG' | ||
| TK = 'TK' | ||
| TO = 'TO' | ||
| TT = 'TT' | ||
| TN = 'TN' | ||
| TM = 'TM' | ||
| TC = 'TC' | ||
| TV = 'TV' | ||
| TR = 'TR' | ||
| UG = 'UG' | ||
| UA = 'UA' | ||
| AE = 'AE' | ||
| GB = 'GB' | ||
| UM = 'UM' | ||
| US = 'US' | ||
| UY = 'UY' | ||
| UZ = 'UZ' | ||
| VU = 'VU' | ||
| VE = 'VE' | ||
| VN = 'VN' | ||
| VG = 'VG' | ||
| VI = 'VI' | ||
| WF = 'WF' | ||
| EH = 'EH' | ||
| YE = 'YE' | ||
| ZM = 'ZM' | ||
| ZW = 'ZW' | ||
| AX = 'AX' |
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