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@zhengzhenxian zhengzhenxian released this 06 Mar 14:52
· 99 commits to main since this release
v1.0.0
f95b634
  1. Added Clair3 version number to the VCF header (#141).
  2. Fixed the numpy.int issue when using newer numpy version (#165, PR contributor @Aaron Tyler).
  3. The new version converts all IUPAC bases to 'N' in both VCF and GVCF output, use --keep_iupac_bases to keep the IUPAC bases (#153).
  4. Added options --use_longphase_for_intermediate_phasing, --use_whatshap_for_final_output_phasing, --use_longphase_for_final_output_phasing, --use_whatshap_for_final_output_haplotagging to disambiguate intermediate phasing and final VCF phasing either using WhatsHap or LongPhase, old options are still usable (#164).
  5. Fixed "shell script interpreter selection problem" when using Clair3 as a host user within a Docker container (#175).
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