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De novo database format work around #247

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merged 4 commits into from
Apr 12, 2024
Merged

De novo database format work around #247

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377bcc0
Add term from meeting discussion
mobiusklein Mar 20, 2024
8845d31
Merge branch 'master' of https://github.com/HUPO-PSI/psi-ms-CV into d…
mobiusklein Apr 12, 2024
d62e374
Amend term
mobiusklein Apr 12, 2024
3120986
Update date
mobiusklein Apr 12, 2024
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12 changes: 9 additions & 3 deletions psi-ms.obo
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
format-version: 1.2
data-version: 4.1.146
date: 05:04:2024 13:22
data-version: 4.1.147
date: 12:04:2024 13:22
saved-by: Joshua Klein
auto-generated-by: OBO-Edit 2.3.1
import: http://purl.obolibrary.org/obo/pato.obo
Expand Down Expand Up @@ -2893,6 +2893,12 @@ name: laser desorption ionization
def: "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material." [PSI:MS]
is_a: MS:1000247 ! desorption ionization

[Term]
id: MS:1000394
name: no sequence database
def: "No reference sequence database was used in the search process to determine the identified peptide sequence, for example as with de novo sequencing." [PSI:PI]
is_a: MS:1001347 ! database file format

[Term]
id: MS:1000395
name: liquid secondary ionization
Expand Down Expand Up @@ -24081,7 +24087,7 @@ def: "The fraction of total protein abundance in a mass spectrometry run or a gr
comment: "High values may indicate a sample handling issue, and/or insufficient sample concentration."
is_a: MS:4000003 ! single value
relationship: has_metric_category MS:4000008 ! ID based metric
relationship: has_value_type xsd:float ! The allowed value-type for this CV
relationship: has_value_type xsd:float ! The allowed value-type for this CV
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
relationship: has_order MS:1002109 ! lower score better
synonym: "PG: Contaminants" NARROW []
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