Add seqio index genome loading #167
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| name: CI | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pipenv | |
| pipenv install --dev | |
| - name: Style check | |
| run: | | |
| pipenv run black | |
| pipenv run isort | |
| pipenv run flake8 | |
| - name: Test with pytest | |
| run: | | |
| chmod -w data/read_only.fasta | |
| pipenv run tests | |
| - name: Upload to Codecov | |
| if: github.event.repository.fork == false | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| - name: Test install | |
| run: | | |
| pip install -e . |