Merge pull request #255 from HadrienG/cov_fix

fix crash when using --coverage (#253)
HadrienG · Feb 23, 2024 · 8f16beb · 8f16beb
2 parents 418c92b + 7858571
commit 8f16beb
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/iss/app.py b/iss/app.py
@@ -64,7 +64,7 @@ def generate_reads(args):
     if readcount_dic is not None:
         n_reads = sum(readcount_dic.values())
         logger.info("Generating %s reads" % n_reads)
-    elif not (args.coverage or args.coverage_file):
+    else:
         n_reads = util.convert_n_reads(args.n_reads)
         logger.info("Generating %s reads" % n_reads)
 

diff --git a/iss/generator.py b/iss/generator.py
@@ -560,7 +560,6 @@ def load_readcount_or_abundance(
             abundance_dic = abundance.parse_abundance_file(coverage_file)
     elif coverage in abundance_dispatch:
         # todo coverage distribution with --draft
-        logger.warning("--coverage is an experimental feature")
         logger.info("Using %s coverage distribution" % coverage)
         if draft:
             abundance_dic = abundance.draft(