Bump requests from 2.31.0 to 2.32.0

README.md

@@ -37,7 +37,7 @@ _Note:_ Insilicoseq requires python >= 3.5
 Alternatively, with docker:
 
 ```shell
-docker pull hadrieng/insilicoseq:latest
+docker pull quay.io/biocontainers/insilicoseq:2.0.0--pyh7cba7a3_0
 ```
 
 For more installation options, please refer to the full [documentation](http://insilicoseq.readthedocs.io)

doc/iss/install.rst

@@ -63,15 +63,16 @@ If you wish to use InSilicoSeq using docker
 
 .. code-block:: bash
 
-    docker pull hadrieng/insilicoseq:latest
+    docker pull docker pull quay.io/biocontainers/insilicoseq:<tag>
 
+Where <tag> should be chosen amongst the tags available on `quay.io <https://quay.io/repository/biocontainers/insilicoseq?tab=tags>`_ .
 To use InSilicoSeq with docker, you need to provide a `volume` to the ``docker run`` command.
 Given with the ``-v`` option, the volume is your way of exchanging data (in this case, your input and output files) with the docker container.
 
 .. code-block:: bash
 
     docker run -v /Users/hadrien/data:/mnt/data -it --rm \
-        hadrieng/insilicoseq iss generate \
+        quay.io/biocontainers/insilicoseq:<tag> iss generate \
         --genomes /mnt/data/genomes.fasta -m miseq \
         -o /mnt/data/reads
 

iss/app.py

@@ -64,7 +64,7 @@ def generate_reads(args):
     if readcount_dic is not None:
         n_reads = sum(readcount_dic.values())
         logger.info("Generating %s reads" % n_reads)
-    elif not (args.coverage or args.coverage_file):
+    else:
         n_reads = util.convert_n_reads(args.n_reads)
         logger.info("Generating %s reads" % n_reads)
 

iss/generator.py

@@ -560,7 +560,6 @@ def load_readcount_or_abundance(
             abundance_dic = abundance.parse_abundance_file(coverage_file)
     elif coverage in abundance_dispatch:
         # todo coverage distribution with --draft
-        logger.warning("--coverage is an experimental feature")
         logger.info("Using %s coverage distribution" % coverage)
         if draft:
             abundance_dic = abundance.draft(

iss/version.py

@@ -1 +1 @@
-__version__ = "1.6.0"
+__version__ = "2.0.1"