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Sahay committed Oct 4, 2021
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10 changes: 4 additions & 6 deletions README.md
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# SSAM-lite-server

[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](./LICENSE)
[![DOI:10.1101/2021.09.2x.xxxxxxxx](http://img.shields.io/badge/DOI-10.1101/2021.09.2x.xxxxxxxx-B31B1B.svg)](https://doi.org/10.1101/2021.09.2x.xxxxxxxx)
[![DOI:10.1101/2021.09.29.462194](http://img.shields.io/badge/DOI-10.1101/2021.09.29.462194-B31B1B.svg)](https://doi.org/10.1101/2021.09.29.462194)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5517607.svg)](https://doi.org/10.5281/zenodo.5517607)

... is a lightweight implementation of the [SSAM framework](https://www.nature.com/articles/s41467-021-23807-4).
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## Citations

TODO update Citation when ready

Sebastian Tiesmeyer, Shashwat Sahay, Niklas Mueller-Boetticher, Roland Eils, Sebastian Mackowiak, Naveed Ishaque.
Sebastian Tiesmeyer, Shashwat Sahay, Niklas Müller-Bötticher, Roland Eils, Sebastian D. Mackowiak, Naveed Ishaque.
2021.
"[SSAM-lite: a light-weight web-based framework for analysis of spatially resolved transcriptomics data](https://biorxiv.org)"
*bioRxiv*. doi: 10.1101/2021....
"[SSAM-lite: a light-weight web app for rapid analysis of spatially resolved transcriptomics data](https://www.biorxiv.org/content/10.1101/2021.09.29.462194)"
*bioRxiv*. doi: 10.1101/2021.09.29.462194


## Sample data
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11 changes: 6 additions & 5 deletions app/templates/indexMain.html
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to learn more about the methods.
</div>
<div style="text-align: center; padding: 15px;">
SSAM-lite has been designed and implemented by Seastian Tiesmeyer at the Berlin Institute of Health.
Learn more about SSAM-lite <a href="https://www.biorxiv.org/" target="_blank" rel="noopener noreferrer"><u>here</u></a>. <!-- TODO update Link. -->
SSAM-lite-Server has been designed and implemented by Seastian Tiesmeyer and Shashwat Sahay at the Berlin Institute of Health.
Learn more about SSAM-lite <a href="https://www.biorxiv.org/content/10.1101/2021.09.29.462194" target="_blank" rel="noopener noreferrer"><u>here</u></a>.
</div>
<div style="text-align: center; padding: 15px;">
For a comprehensive documentation of the SSAM-lite tool check out our
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If you are using SSAM-lite for your research please cite:
</div>
<div style="text-align: center; padding-top: 5px; padding-bottom: 50px;">
Tiesmeyer S, et al. 2021. SSAM-lite. <i>bioRxiv</i>. doi: 10.1101/2021.... <!-- TODO update citation -->
Tiesmeyer S, et al. 2021. SSAM-lite: a light-weight web app for rapid analysis of spatially resolved transcriptomics data.
<i>bioRxiv</i>. doi: 10.1101/2021.09.29.462194
</div>


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<div class="d-flex">
<a href="https://www.biorxiv.org/content/10.1101/800748v2" target="_blank"
rel="noopener noreferrer">
<a href="https://www.biorxiv.org/content/10.1101/2021.09.29.462194" target="_blank"
rel="noopener noreferrer">
<img src="{{ url_for('static', filename='img/logo_biorxiv.png')}}"
style="height: 40px; width: auto; padding: 5px;">
</a> <!-- TODO update Link. -->
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