Onepop sim

Hjorthmedh · Nov 8, 2023 · 6fac291 · 6fac291
1 parent ed56cf2
commit 6fac291
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Showing 5 changed files with 14 additions and 11 deletions.
diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job
@@ -2,14 +2,17 @@
 #SBATCH --partition=main
 #SBATCH -o log/runSnudda-%j-output.txt
 #SBATCH -e log/runSnudda-%j-error.txt
-#SBATCH -t 1:59:00
+#SBATCH -t 0:59:00
 #SBATCH -J Snudda
 #SBATCH -A naiss2023-5-231
-#SBATCH --nodes=2
-#SBATCH -n 256
+#SBATCH --nodes=1
+#SBATCH -n 128
 #SBATCH --cpus-per-task=2
 #SBATCH --mem-per-cpu=930M
-#SBATCH --mail-type=ALL                                                         
+#SBATCH --mail-type=ALL
+
+# REMEMBER TO CREATE THE "log" DIRECTORY
+
 module load snic-env
 
 
@@ -19,8 +22,8 @@ ulimit -s unlimited
 
 
 #let NWORKERS="$SLURM_NTASKS-2"
-let NWORKERS="100"
-# let NWORKERS="50"
+#let NWORKERS="100"
+let NWORKERS="50"
 
 export IPNWORKERS=$NWORKERS
 
@@ -33,7 +36,7 @@ source $HOME/Snudda/snudda_env/bin/activate
 
 #.. Start the ipcontroller
 export FI_CXI_DEFAULT_VNI=$(od -vAn -N4 -tu < /dev/urandom)
-srun -n 1 -N 1 -c 2 --exact --overlap --mem=0 ./../ipcontroller_new.sh &
+srun -n 1 -N 1 -c 2 --exact --overlap --mem=0 ./../../ipcontroller_new.sh &
 
 
 echo ">>> waiting 60s for controller to start"

diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh
@@ -111,7 +111,7 @@ else
     #.. Shutdown ipcontroller
     echo "Shutting down ipcontroller"
 
-    python ../ipcontroller_shutdown.py
+    python ../../ipcontroller_shutdown.py
 
 
     date

diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job
@@ -12,7 +12,7 @@
 
 # You need to point this as the directory where you created the network in
 #NETWORK_DIR=/cfs/klemming/home/${USER:0:1}/$USER/Snudda/examples/parallel/KTH_PDC/networks/test_10k
-NETWORK_DIR=networks/lateral_onepop
+NETWORK_DIR=../networks/lateral_onepop
 
 export N_WORKERS=$SLURM_NTASKS
 

diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json
@@ -3,7 +3,7 @@
         "Ctx_1" : {
             "generator" : "poisson",
             "start" : [0.5, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0],
-            "end" : [1.0, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5],
+            "end" :   [1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5],
             "frequency" : [2, 4, 6, 8, 10, 12, 14, 16, 18, 20],
             "conductance" : 0.5e-9,
             "nInputs" : 50,
@@ -19,7 +19,7 @@
         "Ctx_1" : {
             "generator" : "poisson",
             "start" : [0.5, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0],
-            "end" : [1.0, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5],
+            "end" :   [1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5],
             "frequency" : [2, 4, 6, 8, 10, 12, 14, 16, 18, 20],
             "conductance" : 0.5e-9,
             "nInputs" : 50,

diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/log/.empty b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/log/.empty