Updated neuromodulation code to also handle simulation_config

Hjorthmedh · Dec 9, 2023 · 91a671b · 91a671b
1 parent f84aa77
commit 91a671b
Show file tree

Hide file tree

Showing 3 changed files with 8 additions and 0 deletions.
diff --git a/snudda/core.py b/snudda/core.py
@@ -697,6 +697,7 @@ def simulate(self,
                                                     disable_gap_junctions=disable_gj,
                                                     disable_synapses=disable_synapses,
                                                     log_file=log_file,
+                                                    simulation_config=simulation_config,
                                                     verbose=verbose)
 
                 sim.setup()
@@ -714,6 +715,7 @@ def simulate(self,
                                                            disable_synapses=disable_synapses,
                                                            log_file=log_file,
                                                            neuromodulator_description=neuromod_dict,
+                                                           simulation_config=simulation_config,
                                                            verbose=verbose)
 
                 sim.setup()

diff --git a/snudda/neuromodulation/neuromodulation_synapse.py b/snudda/neuromodulation/neuromodulation_synapse.py
@@ -85,6 +85,8 @@ def setup(self):
         self.check_memory_status()
         self.pc.barrier()
 
+        self.setup_parse_sim_info()
+
     def neuromodulation_setup(self):
 
         # This loops through all the synapses, and connects the relevant ones

diff --git a/snudda/simulate/simulate.py b/snudda/simulate/simulate.py
@@ -272,6 +272,10 @@ def setup(self):
         self.check_memory_status()
         self.pc.barrier()
 
+        self.setup_parse_sim_info()
+
+    def setup_parse_sim_info(self):
+
         if self.sim_info:
 
             if "record_all_soma" in self.sim_info and self.sim_info["record_all_soma"]: