Code

Region mesh redux#392

Code

Merged

Hjorthmedh merged 44 commits intodevHjorthmedh/Snudda:devfrom region_mesh_reduxHjorthmedh/Snudda:region_mesh_reduxCopy head branch name to clipboardOct 23, 2023

+76,723-263

Commits

Commits on Oct 6, 2023

• In progress

  Hjorthmedh

  committed
  7e1201e

• Switched to open3d, faster

  Hjorthmedh

  committed
  f764909

• Scaling fixed

  Hjorthmedh

  committed
  0c3562b

• Updated

  Hjorthmedh

  committed
  806bbef

Commits on Oct 9, 2023

• Switched to faster RegionMeshRedux and NeuronPlacer

  Hjorthmedh

  committed
  480fce0

• Add watertight single-hemisphere versions of nuclei meshes

  wthun

  committed
  c745d8b

• changed path to local

  wthun

  committed
  bca990b

Commits on Oct 10, 2023

• Unit tests

  Hjorthmedh

  committed
  63e054f

• Merge branch 'region_mesh_redux' of github.com:Hjorthmedh/Snudda into region_mesh_redux

  Hjorthmedh

  committed
  a3d8d01

• Tests

  Hjorthmedh

  committed
  9897134

• Tests

  Hjorthmedh

  committed
  175ed01

• Printing morphology keys

  Hjorthmedh

  committed
  2641e39

Commits on Oct 11, 2023

• In progress

  Hjorthmedh

  committed
  7584903

• Initial

  Hjorthmedh

  committed
  01b186e

Commits on Oct 12, 2023

• In progrss

  Hjorthmedh

  committed
  446f380

• Work in progress

  Hjorthmedh

  committed
  a91f28f

Commits on Oct 13, 2023

• Work in progress

  Hjorthmedh

  committed
  cec4a23

Commits on Oct 16, 2023

• Work in progress

  Hjorthmedh

  committed
  dc82c42

• Check works

  Hjorthmedh

  committed
  8c8c6eb

• Rot representation can appears to be working

  Hjorthmedh

  committed
  cd93552

• In progress

  Hjorthmedh

  committed
  61a7b79

Commits on Oct 17, 2023

• In progress

  Hjorthmedh

  committed
  1d14f15

Commits on Oct 18, 2023

• Dendrite now bends, does axon also bend?

  Hjorthmedh

  committed
  76f771b

• Bendy

  Hjorthmedh

  committed
  b876b51

• Integrating code in workflow, added stayInsideMesh option to neurons (it might get renamed)

  Hjorthmedh

  committed
  b9e6de1

Commits on Oct 19, 2023

• Fixed rotation representation

  Hjorthmedh

  committed
  47a02a5

• Profiling, trying to speed up

  Hjorthmedh

  committed
  adca95f

• Cleanup

  Hjorthmedh

  committed
  9033221

• Work in progress, testing on cube, starting to work on parallell bending

  Hjorthmedh

  committed
  9ae9c50

Commits on Oct 20, 2023

• Integrating into place, serial

  Hjorthmedh

  committed
  612fde5

• Fixed representation, still need to check bending

  Hjorthmedh

  committed
  305f2ab

• Working in serial

  Hjorthmedh

  committed
  236f473

• Fixed seeds

  Hjorthmedh

  committed
  62e9490

• In progress

  Hjorthmedh

  committed
  98a8311

Commits on Oct 23, 2023

• Work in progress

  Hjorthmedh

  committed
  6aadd90

• Parallel execution

  Hjorthmedh

  committed
  a882245

• Updated notebook

  Hjorthmedh

  committed
  005fd58

• adding debug info

  Hjorthmedh

  committed
  bab251a

• Update unit test

  Hjorthmedh

  committed
  65c7c6c

• Fixing unit test

  Hjorthmedh

  committed
  d869031

• Set random seed

  Hjorthmedh

  committed
  62c9c54

• Test

  Hjorthmedh

  committed
  c3d36f3

• Sorting list of keys, to make sure order is the same

  Hjorthmedh

  committed
  cc638a8

• Fixed mkdir

  Hjorthmedh

  committed
  bdaf814