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Deactivate Conda Env In HPC Init Script #388

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merged 2 commits into from
Nov 8, 2024
Merged

Deactivate Conda Env In HPC Init Script #388

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d4c3c7f
Conditional deactivate env, then activate new env
TimothyWillard Nov 7, 2024
c4264ba
Split conda activate into three cases
TimothyWillard Nov 7, 2024
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8 changes: 8 additions & 0 deletions batch/hpc_init.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -52,6 +52,14 @@ if [ -z "${FLEPI_CONDA}" ]; then
fi
echo "Using '$FLEPI_CONDA' for \$FLEPI_CONDA."
fi
CURRENT_CONDA_ENV=$( conda info | grep "active environment" | awk -F ':' '{print $2}' | xargs )
if [ "$CURRENT_CONDA_ENV" = "$FLEPI_CONDA" ]; then
echo "Detected the activate conda environment is '$FLEPI_CONDA' already, but will refresh."
conda deactivate
elif [ "$CURRENT_CONDA_ENV" != "None" ]; then
echo "Detected an active conda environment '$CURRENT_CONDA_ENV'. This will be deactivated and the '$FLEPI_CONDA' environment wil be activated."
conda deactivate
fi
conda activate $FLEPI_CONDA

# Check the conda environment is valid
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