Update docker image to use mamba based image + use conda packages as … #589
Workflow file for this run
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| name: CICD | |
| on: | |
| # Run CICD for non-draft pull request | |
| pull_request: | |
| branches: | |
| - main | |
| # Also run when the pull request merges (which generates a push) | |
| # So that we can tag the docker image appropriately. | |
| push: | |
| branches: | |
| - main | |
| - staging-* | |
| env: | |
| nexus_server: 10.128.81.69:8082 | |
| jobs: | |
| CICD: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| - name: Build docker image | |
| run: docker build --build-arg http_proxy=${{ secrets.PROXY_URL }} --build-arg https_proxy=${{ secrets.PROXY_URL }} -t myria3d . | |
| - name: Run pytest | |
| run: > | |
| docker run | |
| --ipc=host | |
| myria3d | |
| python -m | |
| pytest -rA -v | |
| --ignore=actions-runner | |
| # IMPORTANT: Always run images with --ipc=host and --shm-size=2gb (at least) to enable | |
| # sufficient shared memory when predicting on large files. | |
| - name: Example inference run via Docker with default config and checkpoint | |
| run: > | |
| docker run | |
| -v /var/data/cicd/CICD_github_assets/myria3d_V3.6.0/inputs/:/inputs/ | |
| -v /var/data/cicd/CICD_github_assets/myria3d_V3.6.0/outputs/:/outputs/ | |
| --ipc=host | |
| --shm-size=2gb | |
| myria3d | |
| python run.py | |
| predict.src_las=/inputs/792000_6272000_subset_buildings.las | |
| datamodule.epsg=2154 | |
| predict.output_dir=/outputs/ | |
| task.task_name=predict | |
| # predict.subtile_overlap specifies overlap between adjacent samples (in meters). | |
| - name: Example inference run via Docker with inference-time subtiles overlap to smooth-out results. | |
| run: > | |
| docker run | |
| -v /var/data/cicd/CICD_github_assets/myria3d_V3.6.0/inputs/:/inputs/ | |
| -v /var/data/cicd/CICD_github_assets/myria3d_V3.6.0/outputs/:/outputs/ | |
| --ipc=host | |
| --shm-size=2gb | |
| myria3d | |
| python run.py | |
| --config-path /inputs/ | |
| --config-name proto151_V2.0_epoch_100_Myria3DV3.1.0_predict_config_V3.6.0 | |
| predict.ckpt_path=/inputs/proto151_V2.0_epoch_100_Myria3DV3.1.0.ckpt | |
| datamodule.epsg=2154 | |
| predict.src_las=/inputs/792000_6272000_subset_buildings.las | |
| predict.output_dir=/outputs/ | |
| predict.subtile_overlap=25 | |
| datamodule.batch_size=10 | |
| predict.interpolator.probas_to_save=[building,ground] | |
| task.task_name=predict | |
| - name: Check code neatness (linter) | |
| run: docker run myria3d python -m flake8 | |
| # Everything ran so we tag the valid docker image to keep it | |
| # This happens for push events, which are in particular | |
| # triggered when a pull request is merged. | |
| - name: Tag the docker image with branch name | |
| if: github.event_name == 'push' | |
| run: | | |
| docker tag myria3d:latest myria3d:${{github.ref_name}} | |
| docker run myria3d:${{github.ref_name}} bash # Run the new, tagged image at least once so that is it not prunned by mistake when using docker system prune | |
| # docker save myria3d:${{github.ref_name}} -o /var/data/cicd/CICD_github_assets/CICD_docker_images/myria3d_${github.ref_name}.tar # Save the docker image as myria3d_${github.ref_name}.tar | |
| # get version number and date, to tag the image pushed to nexus | |
| - name: get version number | |
| id: tag | |
| run: | | |
| echo "::set-output name=version::$(docker run myria3d grep '__version__' package_metadata.yaml| cut -d\" -f2)" | |
| echo "::set-output name=date::$(date '+%Y.%m.%d')" | |
| # show possible tags, for debugging purpose | |
| - name: Print tags | |
| run: | | |
| echo "${{steps.tag.outputs.version}}" | |
| echo "${{steps.tag.outputs.date}}" | |
| - name: push main docker on nexus (tagged with a date) | |
| # we push on nexus an image from the main branch when it has been updated (push or accepted pull request) | |
| if: ((github.ref_name == 'main') && (github.event_name == 'push')) | |
| run: | | |
| docker tag myria3d $nexus_server/lidar_hd/myria3d:${{steps.tag.outputs.version}}-${{steps.tag.outputs.date}} | |
| docker login $nexus_server --username svc_lidarhd --password ${{ secrets.PASSWORD_SVC_LIDARHD }} | |
| docker push $nexus_server/lidar_hd/myria3d:${{steps.tag.outputs.version}}-${{steps.tag.outputs.date}} | |
| - name: push branch docker on nexus (tagged with the branch name) | |
| # we push on nexus an image from a branch when it's pushed | |
| if: ((github.event_name == 'push') && (github.ref_name != 'main')) | |
| run: | | |
| docker tag myria3d $nexus_server/lidar_hd/myria3d:${{steps.tag.outputs.version}}-${{github.ref_name}} | |
| docker login $nexus_server --username svc_lidarhd --password ${{ secrets.PASSWORD_SVC_LIDARHD }} | |
| docker push $nexus_server/lidar_hd/myria3d:${{steps.tag.outputs.version}}-${{github.ref_name}} | |
| - name: Clean dangling docker images | |
| if: always() # always do it, even if something failed | |
| run: docker system prune --force # remove dangling docker images, without asking user for confirmation |