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fix: zipped fastqs for kraken #2605

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fix: zipped fastqs for kraken

fix: zipped fastqs for kraken #2605

Run time

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Job Run time
Formatting
1m 52s
Formatting
1m 52s
Cancel-previous-jobs
2s
Cancel-previous-jobs
2s
Linting
34s
Linting
34s
Benchmarks-Tests (benchmark_strain_calling)
10m 1s
Benchmarks-Tests (benchmark_strain_calling)
10m 1s
Technology-Tests (all, all, shotgun)
3m 29s
Technology-Tests (all, all, shotgun)
24m 7s
Benchmarks-Tests (benchmark_assembly)
19m 1s
Benchmarks-Tests (benchmark_assembly)
19m 1s
Technology-Tests (all, all, amplicon)
3m 35s
Technology-Tests (all, all, amplicon)
1h 2m 37s
Benchmarks-Tests (benchmark_mixtures)
9m 50s
Benchmarks-Tests (benchmark_mixtures)
9m 50s
Technology-Tests (all, illumina, shotgun)
3m 28s
Technology-Tests (all, illumina, shotgun)
17m 57s
Benchmarks-Tests (benchmark_non_sars_cov_2)
18m 23s
Benchmarks-Tests (benchmark_non_sars_cov_2)
18m 23s
Technology-Tests (all, illumina, amplicon)
3m 30s
Technology-Tests (all, illumina, amplicon)
19m 20s
Benchmarks-Tests (benchmark_reads)
12m 18s
Benchmarks-Tests (benchmark_reads)
12m 18s
Technology-Tests (all, ont, shotgun)
3m 13s
Technology-Tests (all, ont, shotgun)
51m 17s
Benchmarks-Tests (compare_assemblers)
9m 14s
Benchmarks-Tests (compare_assemblers)
9m 14s
Technology-Tests (all, ont, amplicon)
3m 27s
Technology-Tests (all, ont, amplicon)
1h 46m 40s
Technology-Tests (all, ion, shotgun)
3m 30s
Technology-Tests (all, ion, shotgun)
17m 57s
Technology-Tests (all, ion, amplicon)
3m 27s
Technology-Tests (all, ion, amplicon)
57m 4s
Technology-Tests (all -np, all, shotgun)
56s
Technology-Tests (all -np, all, shotgun)
56s
Technology-Tests (all -np, all, amplicon)
1m 46s
Technology-Tests (all -np, all, amplicon)
1m 46s
Technology-Tests (all -np, illumina, shotgun)
54s
Technology-Tests (all -np, illumina, shotgun)
54s
Technology-Tests (all -np, illumina, amplicon)
1m 40s
Technology-Tests (all -np, illumina, amplicon)
1m 40s
Technology-Tests (all -np, ont, shotgun)
59s
Technology-Tests (all -np, ont, shotgun)
59s
Technology-Tests (all -np, ont, amplicon)
1m 33s
Technology-Tests (all -np, ont, amplicon)
1m 33s
Technology-Tests (all -np, ion, shotgun)
59s
Technology-Tests (all -np, ion, shotgun)
59s
Technology-Tests (all -np, ion, amplicon)
1m 43s
Technology-Tests (all -np, ion, amplicon)
1m 43s
9h 28m 8s